[R] Error in dis[sppInSample,sppInSample]:subscript out of bounds

[Bert Gunter]

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Bert Gunter

"The trouble with having an open mind is that people keep coming along and
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-- Opus (aka Berkeley Breathed in his "Bloom County" comic strip )


On Mon, Nov 1, 2021 at 12:49 PM Zhao Shanshan <sszhao19 using outlook.com> wrote:

> Hi, I have the same problem, can you tell me how to solve it?
>
>
>
>
>
> Hello,
>
> I am new to R and am encountering an error message that I cannot find a
> solution for.
>
> I am attempting to calculate MPD (mean pairwise distance), without
> weighting for abundance, with a community species list and a phylogenetic
> tree in newick format with branch lengths.
>
> I have read in both list and tree .txt files and calculated PD without any
> problem.
>
> To calculate MPD I have entered:>MPD1=mpd(list,cophenetic(tree))
>
> Error:Error in dis[sppInSample, sppInSample] : subscript out of bounds
>
> Thank you for you helpCheersMarion.
>
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