[R] Error: C stack usage 15924320 is too close to the limit

Jeff Newmiller jdnewm|| @end|ng |rom dcn@d@v|@@c@@u@
Sat May 29 22:07:22 CEST 2021

You may need to use smaller data. Anyway, read the Posting Guide, which says for contributed packages to contact the package maintainer


On May 28, 2021 11:55:04 AM PDT, Gossaye Hailu <gossaye15 using gmail.com> wrote:
>I am doing phylogenetic analysis of ecological community data set using
>Picante package to find out PD, MPD, MNTD
>I have run the following arguments
>>tree4.phy<-read.csv("june2016.matrix.csv",sep=",",header =
>= 1)
>>tree4.out<-pd(tree4.phy,tree4.phylotree,include.root = FALSE)
>When I randomize the matrix 999 times the following Error term appears
>>tree4.mpd<-ses.mpd(tree4.phy,cophenetic(tree4.phylotree),runs = 999)
>Error: C stack usage  15923904 is too close to the limit
>How can I solve this error please? I will highly appreciate your help!
>	[[alternative HTML version deleted]]
>R-help using r-project.org mailing list -- To UNSUBSCRIBE and more, see
>PLEASE do read the posting guide
>and provide commented, minimal, self-contained, reproducible code.

Sent from my phone. Please excuse my brevity.

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