[R] RINLA

[David Winsemius]

On 6/9/21 8:48 PM, peri He wrote:
> Dear Friends,
>
> I am running a simple code for rinla.  The INLA package is installed successfully on Rstudio.


Techinically, the package is installed in an R library. You are using 
Rstudio as your IDE, but it does not run packages.

> But when I run inla (y~x,......) function, I get the following error: could not find function "inla"
> Did anybody have the same problem before?
>
> I would appreciate it if any information is shared.
>
> Regards,
>
> install.packages("INLA", repos = "https://inla.r-inla-download.org/R/stable", dep = TRUE)


Despite setting dep=TRUE is still got a warning:

"Warning in install.packages :
   dependencies ‘Ecdat’, ‘mpoly’, ‘symmoments’ are not available"

> library(INLA)
> N = 100      #500, 5000, 25000, 100000
> x = rnorm(N, mean=6, sd=2)
> y = rnorm(N, mean=x,sd=1)
> data = list(x=x, y=y, N=N)
> # The likelihood family is �gaussian�
> model<- inla(y ~ x, family = c("gaussian"), data = data, control.predictor=list(link=1))
> Summary <- (model)

Despite the warning, INLA installed and loaded without complaint and the 
code ran without error.

I later ran:

install.packages(c('Ecdat', 'mpoly', 'symmoments'))        # no problems 
here either.

So I'm unable to recreate your error.

sessionInfo()

#-------------------

R version 4.0.4 (2021-02-15)       #I'm admittedly not up-to-date, If 
you are,  then provide details

I did check to see if there are any later versions of pkg:INLA and could 
not find any

Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 18.04.5 LTS

Matrix products: default
BLAS:   /usr/lib/x86_64-linux-gnu/openblas/libblas.so.3
LAPACK: /usr/lib/x86_64-linux-gnu/libopenblasp-r0.2.20.so

locale:
  [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C LC_TIME=en_US.UTF-8        
LC_COLLATE=en_US.UTF-8
  [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8 
LC_PAPER=en_US.UTF-8       LC_NAME=C
  [9] LC_ADDRESS=C               LC_TELEPHONE=C 
LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C

attached base packages:
[1] parallel  stats     graphics  grDevices utils     datasets methods   
base

other attached packages:
[1] INLA_21.02.23       sp_1.4-5            foreach_1.5.1 
Matrix_1.3-2        RBGL_1.66.0         graph_1.68.0
[7] BiocGenerics_0.36.0

loaded via a namespace (and not attached):
  [1] lattice_0.20-41     codetools_0.2-18    grid_4.0.4 
MatrixModels_0.5-0  stats4_4.0.4        splines_4.0.4
  [7] iterators_1.0.13    tools_4.0.4         yaml_2.2.1 
compiler_4.0.4      BiocManager_1.30.12



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-- 

David.