[R] Problem with a LOESS curve
Duncan Murdoch
murdoch@dunc@n @end|ng |rom gm@||@com
Sat Jan 9 21:13:27 CET 2021
Your x values aren't in increasing order. When you plot lines(x, yfit),
it joins the points in the order you give them, which jumps back and
forth. To fix, try
o <- order(x)
lines(x[o], yfit[o], col="green", lwd=2)
Duncan Murdoch
On 09/01/2021 2:58 p.m., varin sacha via R-help wrote:
> ##############################
> #DATA
> y<-c(499,491,500,517,438,495,501,525,516,494,500,453,479,481,505,465,477,520,520,480,477,416,502,503,497,513,492,469,504,482,502,498,463,504,495)
> x<-c(499,496,424,537,480,484,503,575,540,436,486,506,496,481,508,425,501,519,546,507,452,498,471,495,499,522,509,474,502,534,504,466,527,485,525)
>
> #PLOT
> plot(x,y)
>
> #GAM
> library(mgcv)
> fit3=gam(y~s(x,bs='ps'))
> x.new<- seq(range(x)[1], range(x)[2], len=1000)
> gamfit.new <- as.vector(predict.gam(fit3,data.frame(x=x.new),type="response"))
> lines(x.new, gamfit.new, col="red", lwd=2)
>
> # LOESS
> mod=loess(y~x, span=0.8)
> yfit=predict(mod,newdata=x)
> lines(x,yfit,col="green",lwd=2)
> ##############################
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