[R] differential gene expression

Anas Jamshed @n@@j@m@hed1994 @end|ng |rom gm@||@com
Sun Aug 22 00:55:08 CEST 2021

I have this data:

and I want to compare:
healthy vs Mild healthy vs Highly exposed seronegative (ishgl) Healthy vs
Asymptomatic covid19 patient healthy vs Highly exposed seronegative (non
ishgl)  from this data.

I started like :

gset <- getGEO("GSE162562", GSEMatrix =TRUE, getGPL=FALSE)


sampleinfo = pData(gset[[1]])[, 1:3]

but i need help to proceed futher

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