[R] Unable to extract gene list from chromosome
pj@|nh@07 @end|ng |rom gm@||@com
Thu Apr 8 23:30:31 CEST 2021
I am trying to extract gene list from chromosome number and position, for
that I am using biomaRt in R but I am getting error messages as shown
below. Also below is the code I am using for extraction.
ensembl <- useMart("ensembl")
datasets <- listDatasets(ensembl)
ensembl = useDataset("rnorvegicus_gene_ensembl",mart=ensembl)
AT_AC_Gene <- read.csv("AT-AC-methylkit_biomart-4-7-21.csv",header=T)
filters <- c("chromosome_name","start","end")
values <- list(AT_AC_Gene$chr,AT_AC_Gene$start,AT_AC_Gene$end)
final_1 <- getBM(attributes=attributes, filters=filters, values=values,
The code runs well without any error but the final1 output has 0
observations of 6 variables. Why?
Can anyone help me with this?
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