[R] ggtree: color-code multiple paraphyletic clades

[April Ettington]

Thank you, it seems the solution is to define the nodes in groupOTU using a
list of vectors.

On Thu, Nov 12, 2020 at 12:15 PM Rui Barradas <ruipbarradas using sapo.pt> wrote:

> Hello,
>
> You should post a reproducible example like the posting guide asks you to.
> In the mean time, are you looking for [1], section Group Clades, by
> package ggtree author? It even seems to be the package vignette.
>
> [1]
>
> https://bioconductor.riken.jp/packages/3.8/bioc/vignettes/ggtree/inst/doc/treeManipulation.html
>
>
> Hope this helps,
>
> Rui Barradas
>
> Às 21:59 de 11/11/20, April Ettington escreveu:
> > I've been using groupOTU to color paraphyletic clades in my tree based on
> > lists of tips, but I have multiple clades I want to highlight.  Is there
> > some way to use ggplot to indicate multiple paraphyletic clades?
> >
> > Thank you
> >
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> >
> > ______________________________________________
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> > PLEASE do read the posting guide
> http://www.R-project.org/posting-guide.html
> > and provide commented, minimal, self-contained, reproducible code.
> >
>

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