[R] Help with spTransform() function and final plot colors
Poling, William
Po||ngW @end|ng |rom @etn@@com
Mon May 18 13:51:01 CEST 2020
Thank you Ege, I appreciate your response.
I have move this to r-sig-geo.
WHP
Proprietary
-----Original Message-----
From: Ege Rubak <rubak using math.aau.dk>
Sent: Monday, May 18, 2020 6:41 AM
To: Poling, William <PolingW using aetna.com>; r-help using r-project.org
Subject: [EXTERNAL] Re: [R] Help with spTransform() function and final plot colors
**** External Email - Use Caution ****
You are more likely to get help with specific problems related to
spTransform() on the dedicated list r-sig-geo.
You should provide a minimal reproducible example. Your code refers to e.g. the object `tmp1b`, which we don't have. I think the spTransform() part will work with this correction:
xy <- SpatialPointsDataFrame(sample[,2:3], sample[,1,drop=FALSE],
proj4string=CRS("+proj=longlat
+ellps=WGS84 +datum=WGS84"))
xy <- spTransform(xy, CRS("+init=epsg:27700 +datum=WGS84"))
The spatial workflow in R has largely moved to the `sf` package and you are probably better off using that in the future if you are new in the game anyway.
Hope this helps,
Ege
On Sun, 2020-05-17 at 09:50 +0000, Poling, William via R-help wrote:
> #RStudio Version Version 1.2.1335
> sessionInfo()
> # R version 4.0.0 Patched (2020-05-03 r78349)
> #Platform: x86_64-w64-mingw32/x64 (64-bit) #Running under: Windows 10
> x64 (build 17763)
>
> Hello. I am running my data through a routine I found that finds
> clusters of data points based on distance rule.
>
https://urldefense.proofpoint.com/v2/url?u=https-3A__gis.stackexchange.com_questions_64392_finding-2Dclusters-2Dof-2Dpoints-2Dbased-2Ddistance-2Drule-2Dusing-2Dr&d=DwIGaQ&c=wluqKIiwffOpZ6k5sqMWMBOn0vyYnlulRJmmvOXCFpM&r=j7MrcIQm2xjHa8v-2mTpmTCtKvneM2ExlYvnUWbsByY&m=sFygsSovnYNWjYOpjSzuSLI1MUrJN8Lih39pDQN98xI&s=2FCT-JBdWSB66pNvGLTM7Ec5Q7IbXatXBLsQqYT0gng&e=
>
> 1. I get this error when I get to this point in the routine, see
> complete routine below?
> xy <- spTransform(xy, CRS("+init=epsg:27700 +datum=WGS84")) non finite
> transformation detected:
>
> I tried converting columns from numeric to Integer but did not help.
>
> However, I continue to run the rest of the routine and the final
> sequence, the plot itself, seems to work Can this error be corrected
> somehow, despite the fact that it continues to work, just curious what
> it is I guess"
>
> 2. However in the plot at the end of the routine the color key appears
> with the colors but the clusters in the plot are black, see plot call
> at the end of the routine below?
>
> Thank you for any advice.
>
> WHP
>
> ERROR:
> non finite transformation detected:
> coords.x1 coords.x2
> [1,] -119.7339 39.53939 Inf Inf
> [2,] -119.7665 39.39630 Inf Inf
> [3,] -119.7794 39.28768 Inf Inf
> [4,] -121.0234 39.20503 Inf Inf
> [5,] -122.0047 47.19262 Inf Inf
> [6,] -122.0135 47.18883 Inf Inf
> [7,] -122.0379 47.52190 Inf Inf
> [8,] -122.0578 47.60975 Inf Inf
> [9,] -122.1330 47.13669 Inf Inf
> [10,] -122.1509 47.55962 Inf Inf
> [11,] -122.1706 47.15546 Inf Inf
> [12,] -122.1846 47.23485 Inf Inf
> [13,] -122.1846 48.15307 Inf Inf
> [14,] -122.1851 47.44870 Inf Inf
> [15,] -122.1954 47.68485 Inf Inf
> [16,] -122.1990 47.51610 Inf Inf
> [17,] -122.2014 47.44772 Inf Inf
> [18,] -122.2025 47.69815 Inf Inf
> [19,] -122.2037 47.67190 Inf Inf
> [20,] -122.2090 47.40378 Inf Inf
> [21,] -122.2108 47.25336 Inf Inf
> [22,] -122.2291 47.63880 Inf Inf
> [23,] -122.2419 47.76870 Inf Inf
> [24,] -122.2722 48.04803 Inf Inf
> [25,] -122.2732 47.87700 Inf Inf
> [26,] -122.2804 47.77620 Inf Inf
> [27,] -122.2839 47.82103 Inf Inf
> [28,] -122.2890 47.86899 Inf Inf
> [29,] -122.2993 47.67306 Inf Inf
> [30,] -122.3180 47.38217 Inf Inf
> [31,] -122.3270 47.40378 Inf Inf
> [32,] -122.3474 47.43884 Inf Inf
> [33,] -122.3484 47.53083 Inf Inf
> [34,] -122.3581 47.27678 Inf Inf
> [35,] -122.3618 47.76735 Inf Inf
> [36,] -122.3700 47.56567 Inf Inf
> [37,] -122.3908 47.54938 Inf Inf
> [38,] -122.4128 47.64622 Inf Inf
> [39,] -122.4293 47.17660 Inf Inf
> [40,] -122.4621 47.44505 Inf Inf
> [41,] -122.4904 47.27460 Inf Inf
> [42,] -122.5515 46.93979 Inf Inf
> [43,] -122.7348 42.37320 Inf Inf
> [44,] -122.7827 47.31059 Inf Inf
> [45,] -122.7987 47.23475 Inf Inf
> [46,] -122.8385 42.35119 Inf Inf
> [47,] -122.8537 42.34495 Inf Inf
> [48,] -122.8904 42.39555 Inf Inf
> [49,] -122.8927 42.33022 Inf Inf
> [50,] -122.9451 47.37574 Inf Inf
> [51,] -122.9594 42.30376 Inf Inf
> [52,] -123.0641 47.16428 Inf Inf
> [53,] -123.3413 42.44117 Inf Inf
> Error in spTransform(xSP, CRSobj, ...) :
> failure in points
> 1:2:3:4:5:6:7:8:9:10:11:12:13:14:15:16:17:18:19:20:21:22:23:24:25:26:
> 27:28:29:30:31:32:33:34:35:36:37:38:39:40:41:42:43:44:45:46:47:48:49:
> 50:51:52:53
> In addition: Warning message:
> In spTransform(xSP, CRSobj, ...) : 53 projected point(s) not finite
>
> Here is the data:
> dput(sample)
> structure(list(ID = 1:53, Longitude = c(-119.733899, -119.766493,
> -119.779416, -121.0234, -122.004736, -122.013456, -122.0379,
> -122.0578, -122.132971, -122.150901, -122.170608, -122.18462,
> -122.184639, -122.185079, -122.195398, -122.198994, -122.201356,
> -122.202507, -122.20371, -122.209047, -122.210797, -122.229095,
> -122.2419, -122.27216, -122.273164, -122.280355, -122.28389,
> -122.289043, -122.299261, -122.318009, -122.326987, -122.347382,
> -122.34844, -122.358115, -122.361839, -122.37003, -122.390815,
> -122.41282, -122.429323, -122.462136, -122.490417, -122.551483,
> -122.734847, -122.782736, -122.798669, -122.838498, -122.853683,
> -122.8904, -122.89271, -122.94511, -122.959407, -123.064087,
> -123.341346), Latitude = c(39.53939, 39.396298, 39.287681, 39.205028,
> 47.192616, 47.188833, 47.5219, 47.609748, 47.13669, 47.559616,
> 47.155455, 47.234849, 48.15307, 47.448697, 47.684854, 47.516104,
> 47.447723, 47.698146, 47.6719, 47.403778, 47.253364, 47.638795,
> 47.768701, 48.048027, 47.876997, 47.776205, 47.821029, 47.868987,
> 47.673056, 47.382165, 47.403785, 47.438836, 47.530831, 47.276776,
> 47.76735, 47.565667, 47.549377, 47.646222, 47.176596, 47.445053,
> 47.274599, 46.939789, 42.373195, 47.310595, 47.234748, 42.351189,
> 42.344953, 42.395547, 42.33022, 47.375736, 42.303755, 47.164278,
> 42.441172)), class = "data.frame", row.names = c(NA, -53L))
>
> Here is the routine:
> require(sp)
> require(rgdal)
> #25*1609.34 = 40233.5
> dis <- 40233.5 #Distance threshold 25miles converted to meters
>
> x <- tmp1b[,c(6)]
> head(x)
> y <- tmp1b[,c(5)]
> head(y)
> str(y)
>
> xy <- SpatialPointsDataFrame(matrix(c(x,y), ncol=2),
> data.frame(ID=seq(1:length(x))),
> proj4string=CRS("+proj=longlat
> +ellps=WGS84 +datum=WGS84"))
>
> str(xy)
>
> xy <- spTransform(xy, CRS("+init=epsg:27700 +datum=WGS84"))#Error
> occurring here?
>
> chc <- hclust(dist(data.frame(rownames=rownames(xy using data),
> x=coordinates(xy)[,1], #What is xy using data???? see str(xy)
> y=coordinates(xy)[,2])),
> method="complete")
> str(chc)
>
> view(xy using data)#Look like 3 clusters
>
> # Distance with a 25 Mile threshold
> chc.dis <- cutree(chc, h=dis)
> str(chc.dis)
> view(chc.dis)
>
> # Join results to meuse sp points
> xy using data <- data.frame(xy using data, Clust=chc.dis)
> str(xy using data)
> view(xy using data)
>
> # Plot results
> plot(xy, col=factor(xy using data$Clust), pch=19)
> box(col="black")
> title(main="Clustering")
> legend("topleft", legend=paste("Cluster", 1:3,sep=""),#Change from 4
> in demo to 3 in my data
> col=palette()[1:3], pch=rep(19,3), bg="white")
>
>
>
>
> Proprietary
>
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--
Ege Rubak, Associate Professor,
Department of Mathematical Sciences, Aalborg University Skjernvej 4A, 9220 Aalborg East, Denmark
Phone: (+45)99408861
Mobile: (+45)30230252
Email: rubak using math.aau.dk
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