[R] How to loop over two files ...

[Ana Marija]

Hi Rasmus,

I got those SNPs from two GWAS-es which I run with different
phenotypes and I would like to compare weather the top SNPs in both of
them are in LD.
So 1n.txt and 1g.txt are just top SNPs from those two GWAS-es.
Unfortunately https://ldlink.nci.nih.gov/?tab=ldpair works for only
two SNPs at the time and I need to do that for 300 pairs

On Fri, Jun 19, 2020 at 6:42 PM Rasmus Liland <jral using posteo.no> wrote:
>
> On 2020-06-19 14:34 -0500, Ana Marija wrote:
> >
> > I have two files (each has 300 lines)like this:
>
> The example looks quite similar to the R example in
> https://rest.ensembl.org/documentation/info/ld_pairwise_get#ra
> ...
>
> The question becomes: how did you query the
> 600 variant names in 1g.txt and 1n.txt?
>
>   curl 'https://rest.ensembl.org/ld/human/pairwise/rs6792369/rs1042779?' -H 'Content-type:application/json'
>
> shows the 26 population_names for the
> rs6792369/rs1042779 combination ...