[R] Installation of mclust package v5.4.6 on R v4.0.1 on Ubuntu v20.04 hangs

[Bert Gunter]

Probably better posted on R-sig-debian.

Bert Gunter

"The trouble with having an open mind is that people keep coming along and
sticking things into it."
-- Opus (aka Berkeley Breathed in his "Bloom County" comic strip )


On Wed, Jun 17, 2020 at 11:33 AM Venkatesh Prasad Ranganath <
rvprasad using cis.ksu.edu> wrote:

> Hey All,
>
> When I execute 'Rscript -e "install.packages('mclust')"` with R 4.0.1 on
> Ubuntu 20.04, the process hangs during package preparation.  Any idea how
> to fix or debug this issue?
>
> Venkatesh-Prasad Ranganath
>
> -----------------------------------------
> ENV: R v4.0.1, GCC v9, Ubuntu v20.04
> CMD: Rscript -e "install.packages('mclust')"
> OUTPUT:
> Installing package into ‘/usr/local/lib/R/site-library’
> (as ‘lib’ is unspecified)
> trying URL 'https://cloud.r-project.org/src/contrib/mclust_5.4.6.tar.gz'
> Content type 'application/x-gzip' length 2877519 bytes (2.7 MB)
> ==================================================
> downloaded 2.7 MB
>
> * installing *source* package ‘mclust’ ...
> ** package ‘mclust’ successfully unpacked and MD5 sums checked
> ** using staged installation
> ** libs
> gfortran -fno-optimize-sibling-calls  -fpic  -g -O2
> -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=.
> -fstack-protector-strong  -c dmvnorm.f -o dmvnorm.o
> gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG      -fpic  -g -O2
> -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=.
> -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
> -D_FORTIFY_SOURCE=2 -g  -c init.c -o init.o
> gfortran -fno-optimize-sibling-calls  -fpic  -g -O2
> -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=.
> -fstack-protector-strong  -c mclust.f -o mclust.o
> gfortran -fno-optimize-sibling-calls  -fpic  -g -O2
> -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=.
> -fstack-protector-strong  -c mclustaddson.f -o mclustaddson.o
> gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions
> -Wl,-z,relro -o mclust.so dmvnorm.o init.o mclust.o mclustaddson.o -llapack
> -lblas -lgfortran -lm -lquadmath -lgfortran -lm -lquadmath -L/usr/lib/R/lib
> -lR
> installing to /usr/local/lib/R/site-library/00LOCK-mclust/00new/mclust/libs
> ** R
> ** data
> *** moving datasets to lazyload DB
> ** inst
> ** byte-compile and prepare package for lazy loading
>
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>
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