[R] Error in gee.fit$working.correlation[1, 2] : subscript out of bounds
Phat Chau
ph@t@ch@u @end|ng |rom m@||@utoronto@c@
Thu Jun 4 22:17:41 CEST 2020
Hello,
I have a dataframe in R that looks like the following
cluster id period u_3 timeID startTrt Ijt error y
1: 1 1 0 -1.26 1 1 0 1.2015 17.809
2: 1 2 0 -1.26 1 1 0 -1.6577 14.950
3: 1 3 0 -1.26 1 1 0 -3.8639 12.744
4: 1 4 0 -1.26 1 1 0 1.4978 18.105
5: 1 5 0 -1.26 1 1 0 -5.3182 11.289
When I try to run a gee model on it using the geesmv package which adjusts the variance covariance matrix for small sample sizes as follows
test <- GEE.var.fg(y ~ factor(period) + factor(Ijt),id="id",family=gaussian, dx,corstr="exchangeable")
I get this error message:
Beginning Cgee S-function, @(#) geeformula.q 4.13 98/01/27
running glm to get initial regression estimate
(Intercept) factor(period)1 factor(period)2 factor(period)3 factor(period)4 factor(period)5 factor(Ijt)1
17.25 -8.27 -6.47 -9.13 -8.17 -11.89 8.96
Error in gee.fit$working.correlation[1, 2] : subscript out of bounds
I think the usual culprit for this kind of error message is that the variable being referred to (id in this case I assume) is non-existent. That is clearly not the case here and I checked to make sure it is it not a typo.
Does anyone know why this is? How would I troubleshoot this?
Thank you,
Edward
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