[R] how to import/read .vcf files in R
@okov|c@@n@m@r|j@ @end|ng |rom gm@||@com
Tue Jan 28 18:46:04 CET 2020
Thanks for the tip!
On Tue, Jan 28, 2020 at 11:36 AM Bert Gunter <bgunter.4567 using gmail.com> wrote:
> As this apparently involves genomic data, I would suggest that you ask this on the BioConductor site:
> especially if you don't get effective help here.
> Bert Gunter
> On Tue, Jan 28, 2020 at 9:29 AM Ana Marija <sokovic.anamarija using gmail.com> wrote:
>> I tried doing:
>> > library(vcfR)
>> > vcf <- read.vcfR("ALL.chr1.phase3_shapeit2_mvncall_integrated_v5a.20130502.genotypes.vcf", verbose = FALSE )
>> but this takes forever to load and I am not sure it is even working.
>> Any other suggestion on how I can read in .vcf file in R?
>> R-help using r-project.org mailing list -- To UNSUBSCRIBE and more, see
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>> and provide commented, minimal, self-contained, reproducible code.
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