[R] how to import/read .vcf files in R

Ana Marija @okov|c@@n@m@r|j@ @end|ng |rom gm@||@com
Tue Jan 28 18:34:15 CET 2020


I tried doing:
> library(vcfR)
> vcf <- read.vcfR("ALL.chr1.phase3_shapeit2_mvncall_integrated_v5a.20130502.genotypes.vcf", verbose = FALSE )

but this takes forever to load and I am not sure it is even working.

Any other suggestion on how I can read in .vcf file in R?


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