[R] question about system.file()

[Jeff Newmiller]

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On April 10, 2020 8:33:41 PM PDT, Anand Menon <anandmenon.12 using gmail.com> wrote:
>Hello, Could you please help unsubscribe me from these emails. Thank
>you.
>
>Kind Regards,
>Anand K Menon
>Cell: 1-416-939-3671
>
>
>On Fri, Apr 10, 2020 at 3:46 PM Ana Marija
><sokovic.anamarija using gmail.com>
>wrote:
>
>> Hello,
>>
>> I would like to try this example in this link:
>>
>>
>https://www.rdocumentation.org/packages/SNPRelate/versions/1.6.4/topics/snpgdsBED2GDS
>>
>> for example this line:
>>
>> bed.fn <- system.file("extdata", "plinkhapmap.bed.gz",
>package="SNPRelate")
>>
>> I have in current directory from where I would run this function a
>> file named output4.bed
>>
>> in order to run the above, can I just run this:
>> bed.fn <- system.file("output4.bed", package="SNPRelate")
>>
>> what is "extdata" ? Do I need it if my output4.bed is in the
>directory
>> from where I am running this?
>>
>> Also do I need to have .gz format of output4.bed?
>>
>> Thanks
>> Ana
>>
>> ______________________________________________
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>> http://www.R-project.org/posting-guide.html
>> and provide commented, minimal, self-contained, reproducible code.
>>
>
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>
>______________________________________________
>R-help using r-project.org mailing list -- To UNSUBSCRIBE and more, see
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>PLEASE do read the posting guide
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>and provide commented, minimal, self-contained, reproducible code.

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