[R] annotation help in ggplot2

[Moshiur Rahman]

Thanks Rishi,

Please find attached the data herewith.



On Fri, Sep 20, 2019 at 5:48 PM ঋষি ( ऋषि / rIsHi ) <rishi.dasroy using gmail.com>
wrote:

> There are no attached data .
>
> On Fri, Sep 20, 2019 at 11:40 AM Moshiur Rahman <mrahmankufmrt using gmail.com>
> wrote:
>
>> Dear ggplot2 experts,
>>
>> I'm struggling to make a plot having family id in x-axis and female id
>> below that family id where each 4 families have a single female id.
>>
>> I also need to add male id on top of each bar which I can do before
>> grid.arrange, but fail after doing it. So, any suggestions?
>>
>> Please find below my codes and help me to complete it perfectly.
>> #data
>> data <- read.table("R-help_ggplot2.csv", header=TRUE, sep=",")
>> names(data)
>> #packages
>> library(ggplot2)
>> library(grid)
>> library(gridExtra)
>> library(scales)
>> library(ggpubr)
>> #plot codes
>> p1 =
>> ggplot(data,aes(x=factor(family),y=offs.surv.perct,fill=factor(treat)))+
>>     geom_bar(stat="identity", position="dodge")+
>>     #facet_wrap(~ Female)+
>>     geom_bar(stat="identity", position="dodge", colour="black",
>> show.legend= TRUE) + # show_guide = TRUE gives legend boarder
>>     #geom_hline(yintercept=15, size=0.5, linetype = 2)+ ### middle line
>>     scale_fill_manual(values=c("grey", "white")) + # grey80 is closer to
>> white than black
>>     xlab("Family") +
>>     ylab (expression(paste("Offspring survival rate (%)"))) +
>>     #coord_cartesian(xlim=c(0,40), ylim=c(0,60), clip="off")+
>>     scale_y_continuous(expand = c(0, 0), limits = c(0, 60))+
>>     theme(legend.title = element_text(colour="black", size=12))+
>>     theme(legend.text = element_text(colour="black", size=11))+
>>     theme(legend.background = element_blank())+
>>     theme(legend.key = element_blank())+
>>     theme(legend.box.background = element_blank())+
>>     theme(legend.key.size = unit(2, "mm"),legend.key.width =
>> unit(0.5,"cm"))+
>>     theme(legend.position=c(0.05,0.9),legend.direction
>> ="vertical",legend.box = "vertical")+ # add legend on top
>>     theme(panel.background = element_rect(fill = "transparent"))+
>>     theme(axis.line = element_line(colour =
>> "black"),axis.text.x=element_text(size=10,
>> colour="black"),axis.text.y=element_text(size=10, colour="black"),
>>         axis.title.y = element_text(size=12, colour =
>> "black",margin=margin(0,5,0,0)),
>>         axis.title.x = element_blank(),
>>         strip.text.x = element_blank(),# remove top level title (high and
>> low)
>>         strip.background = element_blank(),# remove top level background
>>         panel.grid.major = element_blank(),# remove grid line within the
>> plot
>>         panel.grid.minor = element_blank(),
>>         panel.border = element_blank())
>> p1
>>
>> ### legend correction
>> p2<- p1 + guides(fill = guide_legend(title="Fertilization group",keywidth
>> =
>> 1,keyheight = 1,
>>                              title.theme = element_text(size=12, colour =
>> "black", angle = 0)))+
>>   theme(legend.text = element_text(size = 12, colour = "black", angle =
>> 0))
>>
>> p2
>>
>> ###plot margins
>> p3<-p2+theme(plot.margin = unit(c(1,1,1.7,1), "lines"))
>> p3
>>
>> #x-axis label
>> p4<-grid.arrange(
>>   p3,
>>   bottom = textGrob(
>>     "Family and female number",
>>     gp = gpar(fontsize = 12, cex=1), #fontface = "bold",
>>     vjust = 0.5, hjust = 0.5,x = 0.52))
>>
>> # annotation (NOT WORKING)
>> p5<-p4+annotate("text", label = "M1", x = 1, y = 25.03, fontface = 1,
>> size=3,angle = 90)
>> p5
>> p6<-p5+annotate("text", label = "M2", x = 2, y = 18.37, fontface = 1,
>> size=3,angle = 90)
>> p6
>> p7<-p6+annotate("text", label = "M3", x = 3, y = 21.7, fontface = 1,
>> size=3,angle = 90)
>> p7
>> p8<-p7+annotate("text", label = "M1-2-3", x = 4, y = 19.1, fontface= 1,
>> size=3,angle = 90)
>> p8
>> Fig1.1<-p8+annotate("segment", size=0.3, x=c(1,1,4),xend=c(1,4,4),
>>                          y= c(26,28,28), yend=c(28,28,21))+
>>   annotate("text",x=2.45,y=29.5,fontface = 1, size=3,angle =
>> 90,label=c("F1"))
>>
>> Fig1.1
>>
>> Please find attached also my data.
>>
>> Any assistance will be highly appreciated.
>>
>> Regards,
>>
>> Moshi
>>
>>
>> JSPS Postdoctoral Fellow
>> Laboratory of Population Biology
>> Department of Marine Biosciences
>> Graduate School of Marine Science and Technology
>> Tokyo University of Marine Science and Technology
>> 4-5-7 Konan, Minato-ku, Tokyo 108-8477, Japan
>> Mobile: 050-6874-9072
>> ______________________________________________
>> R-help using r-project.org mailing list -- To UNSUBSCRIBE and more, see
>> https://stat.ethz.ch/mailman/listinfo/r-help
>> PLEASE do read the posting guide
>> http://www.R-project.org/posting-guide.html
>> and provide commented, minimal, self-contained, reproducible code.
>>
>
>
> --
>
>
>
> With regards
> Rishi Das Roy
>


-- 
Md. Moshiur Rahman, PhD

JSPS Postdoctoral Fellow
Laboratory of Population Biology
Department of Marine Biosciences
Graduate School of Marine Science and Technology
Tokyo University of Marine Science and Technology
4-5-7 Konan, Minato-ku, Tokyo 108-8477, Japan
Mobile: 050-6874-9072

.........................

Professor
Fisheries and Marine Resource Technology Discipline
Khulna University, Khulna - 9208
BANGLADESH.
Google scholar:
https://scholar.google.com.au/citations?user=uElrJSsAAAAJ&hl=en
ResearchGate: https://www.researchgate.net/profile/Md_Moshiur_Rahman2
ORCID: https://orcid.org/my-orcid