[R] add error bars to rarecurve from package vegan

[Duncan Mackay]

Hi Luigi

Using the help example for vegan:: rarefy 
It appears that the example for vegan:: rarefy does not work for SE=T
in the plot command the x values (S) are a vector and  yvalues Srare is a
list

It appears that the argument se = TRUE is not coded
So that your commands cannot produce error bars

Suggest contacting the maintainer

Regards

Duncan

Duncan Mackay
Department of Agronomy and Soil Science
University of New England
Armidale NSW 2350


-----Original Message-----
From: R-help [mailto:r-help-bounces using r-project.org] On Behalf Of Luigi
Marongiu
Sent: Tuesday, 22 October 2019 01:44
To: Eric Berger
Cc: r-help
Subject: Re: [R] add error bars to rarecurve from package vegan

sorry there was a typo: it is `se = TRUE` but the result is the same:
SE is not a rarecurve's parameter.

On Mon, Oct 21, 2019 at 4:41 PM Luigi Marongiu <marongiu.luigi using gmail.com>
wrote:
>
> I did not put an example because it is a question of the basic syntax
> of this function, not about the data at hand. However, here is a
> working example:
>
> ```
> library(vegan)
> data(dune)
> spAbund <- rowSums(dune)
> raremin <- min(rowSums(dune))
> rarecurve(dune, col = "blue", es = TRUE)
> ```
>
> Thank you
>
> On Mon, Oct 21, 2019 at 2:41 PM Eric Berger <ericjberger using gmail.com> wrote:
> >
> > You might improve your chances for getting a response by supplying
> > a minimal reproducible example. Remember to include all the library()
commands
> > showing which packages you are using.
> >
> >
> > On Mon, Oct 21, 2019 at 2:53 PM Luigi Marongiu
<marongiu.luigi using gmail.com> wrote:
> >>
> >> Hello,
> >> I am using the package vegan to generate rarefaction curves with the
> >> function rarecurve.
> >> Is it possible to add error bars to the plot? I tried to add se =
> >> FALSE but it did not work.
> >> Also, would it be possible to remove the box around the label of the
data?
> >> Thank you
> >>
> >> --
> >> Best regards,
> >> Luigi
> >>
> >> ______________________________________________
> >> R-help using r-project.org mailing list -- To UNSUBSCRIBE and more, see
> >> https://stat.ethz.ch/mailman/listinfo/r-help
> >> PLEASE do read the posting guide
http://www.R-project.org/posting-guide.html
> >> and provide commented, minimal, self-contained, reproducible code.
>
>
>
> --
> Best regards,
> Luigi



-- 
Best regards,
Luigi

______________________________________________
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and provide commented, minimal, self-contained, reproducible code.