[R] Accessing/Visualizing Probe Sets to determine Data Association

[Spencer Brackett]

My apologies

On Thu, Jul 18, 2019 at 4:00 PM Bert Gunter <bgunter.4567 using gmail.com> wrote:

> This query should almost certainly be posted on the Bioconductor Help site
> rather than here. Especially so as it is a general question about a
> genomics "workflow" rather than a question about R programming.
>
> Bert Gunter
>
> "The trouble with having an open mind is that people keep coming along and
> sticking things into it."
> -- Opus (aka Berkeley Breathed in his "Bloom County" comic strip )
>
>
> On Thu, Jul 18, 2019 at 12:55 PM Spencer Brackett <
> spbrackett20 using saintjosephhs.com> wrote:
>
>>  Good evening,
>>
>>   I am dealing with an already analyzed  .RData file consisting of
>> pre-configured data objects loaded into my environment. I am attempting to
>> take this data, which shows an overall correlation of survival with
>> methylation pattern for a form of brain cancer, and go to the individual
>> probe sets and see if MGMT is one of the genes whose methylation show an
>> association with survival. To do this I am under the impression that I
>> have
>> to visualize the probesets in order to view them/determine what gene or
>> genes (unbiasedly) show an association between meth. and survival. I have
>> been trying to run a few different methods such as microarray probe set
>> mapping through Ensembl, but without avail.
>> Would anyone perhaps know of a procedure/workflow that I could use to
>> achieve this?
>>
>> Best,
>>
>> Spencer
>>
>>         [[alternative HTML version deleted]]
>>
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>

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