[R] pattern evaluation in electron microscopy images

[PIKAL Petr]

Hallo Steve.

Thank you for pointing to ImageJ, I will try to inspect it. I expected that somebody in R comunity automated such procedure within some R package, but it is probably too specialised.

S pozdravem | Best Regards
RNDr. Petr PIKAL
Vedoucí Výzkumu a vývoje | Research Manager
PRECHEZA a.s.
nábř. Dr. Edvarda Beneše 1170/24 | 750 02 Přerov | Czech Republic
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> -----Original Message-----
> From: S Ellison <S.Ellison using LGCGroup.com>
> Sent: Monday, February 11, 2019 12:54 PM
> To: PIKAL Petr <petr.pikal using precheza.cz>; r-help using r-project.org
> Subject: RE: pattern evaluation in electron microscopy images
> 
> Not really my field, but would you not approach this using FFT on selected
> regions?
> 
> I think IMageJ has some capability in that area; see example at
> https://imagej.nih.gov/ij/docs/examples/tem/.
> 
> Steve Ellison
> 
> 
> 
> > -----Original Message-----
> > From: R-help [mailto:r-help-bounces using r-project.org] On Behalf Of PIKAL
> > Petr
> > Sent: 08 February 2019 09:54
> > To: r-help using r-project.org
> > Subject: [R] pattern evaluation in electron microscopy images
> >
> > Dear all
> >
> > I enclose 3 electron microscope images in which I would like to
> > evaluate plane spacing.
> >
> > Before I start to dig deeper and use trial and error in trying to find
> > some packages/functions for such pattern evaluation in electron
> > microscopy pictures I would like to ask if anybody could point me to
> > suitable packages/functions.
> >
> > I am aware of EBImage package for general purpose image manipulation,
> > but it does not have such functionality.
> >
> > Best regards
> > Petr
> >
> > If images did not came through please use this link:
> > Stáhnout
> > soubory<https://uschovna.agrofert.cz/dshosts/getfiles.aspx?fip=2475efa
> > 6-
> > a77b-4ff6-8155-d9302e7b151b>.
> >
> > Osobní údaje: Informace o zpracování a ochraně osobních údajů
> > obchodních partnerů PRECHEZA a.s. jsou zveřejněny na:
> > https://www.precheza.cz/zasady-ochrany-osobnich-udaju/ | Information
> > about processing and protection of business partner's personal data
> > are available on website: https://www.precheza.cz/en/personal-data-
> > protection-principles/
> > Důvěrnost: Tento e-mail a jakékoliv k němu připojené dokumenty jsou
> > důvěrné a podléhají tomuto právně závaznému prohláąení o vyloučení
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> 
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