[R] Unable to load GRanges

[David Winsemius]

Looks like you do not have permissions to write to that directory, but 
it's not clear that this is a major problem. The updating of boot and 
foreign is not something that regular non BioC users would have usually 
needed.  Did you recently update your R installation? Library locations 
sometimes get changed when you do that.  If so, what happens when you 
execute:

update.packages(checkBuilt=TRUE)


-- 

David.

On 8/17/19 7:56 AM, Tewelde Tesfaye wrote:
> Dear Sir/Madam
> Greetings
> Error message [
> install.packages("BiocManager")
> Installing package into
> ‘C:/Users/default.DESKTOP-DE6RR7L/Documents/R/win-library/3.6’
> (as ‘lib’ is unspecified)
> --- Please select a CRAN mirror for use in this session ---
> trying URL '
> https://cloud.r-project.org/bin/windows/contrib/3.6/BiocManager_1.30.4.zip'
> Content type 'application/zip' length 292998 bytes (286 KB)
> downloaded 286 KB
>
> package ‘BiocManager’ successfully unpacked and MD5 sums checked
>
> The downloaded binary packages are in
>
> C:\Users\default.DESKTOP-DE6RR7L\AppData\Local\Temp\RtmpKSLUUH\downloaded_packages
>> BiocManager::install("GenomicRanges")
> Bioconductor version 3.9 (BiocManager 1.30.4), R 3.6.1 (2019-07-05)
> Installing package(s) 'GenomicRanges'
> trying URL '
> https://bioconductor.org/packages/3.9/bioc/bin/windows/contrib/3.6/GenomicRanges_1.36.0.zip
> '
> Content type 'application/zip' length 2135144 bytes (2.0 MB)
> downloaded 2.0 MB
>
> package ‘GenomicRanges’ successfully unpacked and MD5 sums checked
>
> The downloaded binary packages are in
>
> C:\Users\default.DESKTOP-DE6RR7L\AppData\Local\Temp\RtmpKSLUUH\downloaded_packages
> installation path not writeable, unable to update packages: boot, foreign,
> nlme ]
>
> 	[[alternative HTML version deleted]]
>
> ______________________________________________
> R-help using r-project.org mailing list -- To UNSUBSCRIBE and more, see
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.