[R] Help installing netReg

[Spencer Brackett]

Good evening,

 I am having problems with downloading the package used to generate
regression models on R. The following is the error message I received. I
tried installing BiocManager instead as suggested, but this too did not
work. Any ideas?

The following is the full summary of what I’ve tried thus far...

install.packages("ggplot2")
install.packages("ggplot2")
source("https://bioconductor.org/biocLite.R")
?BiocUpgrade
source("https://bioconductor.org/biocLite.R")biocLite("BiocUpgrade")
source("https://bioconductor.org/biocLite.R")
biocLite("BiocUpgrade")
source("https://bioconductor.org/bioLite.R")
biocLite("netReg")
help("Deprecated")
'BiocManager::install'
biocLite("netReg")
help("oldName-deprecated")
‘??oldName-deprecated’
.Deprecated(new, package=NULL, msg,
old = as.character(sys.call(sys.parent()))[1L])

Best,

Spencer

On Sun, Apr 14, 2019 at 7:58 PM Spencer Brackett <
spbrackett20 using saintjosephhs.com> wrote:

> My apologies... here is the full code in summary
>
> install.packages("ggplot2")
> install.packages("ggplot2")
> source("https://bioconductor.org/biocLite.R")
> ?BiocUpgrade
> source("https://bioconductor.org/biocLite.R")biocLite("BiocUpgrade")
> source("https://bioconductor.org/biocLite.R")
> biocLite("BiocUpgrade")
> source("https://bioconductor.org/bioLite.R")
> biocLite("netReg")
> help("Deprecated")
> 'BiocManager::install'
> biocLite("netReg")
> help("oldName-deprecated")
> ‘??oldName-deprecated’
> .Deprecated(new, package=NULL, msg,
> old = as.character(sys.call(sys.parent()))[1L])
>
> Best,
>
> Spencer
>
>
>
> On Sun, Apr 14, 2019 at 7:20 PM David Winsemius <dwinsemius using comcast.net>
> wrote:
>
>>
>> On 4/14/19 3:20 PM, Spencer Brackett wrote:
>> > Good evening,
>> >
>> >   I am having problems with downloading the package used to generate
>> > regression models on R. The following is the error message I received. I
>> > tried installing BiocManager instead as suggested, but this too did not
>> > work. Any ideas?
>> >
>> > The downloaded binary packages are in
>> > C:\Users\Spencer\AppData\Local\Temp\Rtmp8YKVqx\downloaded_packages
>> > installation path not writeable, unable to update packages: class,
>> cluster,
>> > codetools, foreign,
>> >    lattice, MASS, Matrix, mgcv, nlme, rpart, survival
>> > Warning message:
>> > 'biocLite' is deprecated.
>> > Use 'BiocManager::install' instead.
>> > See help("Deprecated")
>>
>>
>> Since you did not include the code that provoked this message we can
>> only guess that you did in fact use `bioLite`. We also cannot tell what
>> you mean by "problems with downloading the package used to generate
>> regression models on R". The typical first step is to use the glm or lm
>> function for this task and those are both in the stats package which is
>> installed with the base version of R and is loaded by default when R is
>> started up.
>>
>> "
>>
>> Have you tried following the suggestion at the end of the message?
>>
>>
>> And do read the Posting Guide and include "commented, minimal,
>> self-contained, reproducible code."
>>
>>
>> --
>>
>> David.
>>
>> >
>> > Best,
>> >
>> > Spencer
>> >
>> >       [[alternative HTML version deleted]]
>> >
>> > ______________________________________________
>> > R-help using r-project.org mailing list -- To UNSUBSCRIBE and more, see
>> > https://stat.ethz.ch/mailman/listinfo/r-help
>> > PLEASE do read the posting guide
>> http://www.R-project.org/posting-guide.html
>> > and provide commented, minimal, self-contained, reproducible code.
>>
>

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