[R] pheatmap query

[Jim Lemon]

Hi Tanya,
Have you looked at the return value of pheatmap?

ret<-pheatmap(counts_filtered_df,scale="row",cluster_col=FALSE,
 cluster_row=TRUE,border_color=NA,show_rownames = TRUE)
str(ret)
names(ret$tree_row)
names(ret$tree_col)

Look at what is in "ret" to see if your numeric matrix is hidden there.

Jim
On Mon, Sep 3, 2018 at 7:25 PM Singh, Tanya <t.singh using ucl.ac.uk> wrote:
>
> Hi
>
>
>
> I am plotting a pheatmap using following line in a R code
>
> pheatmap(counts_filtered_df,scale="row",cluster_col=FALSE,cluster_row=TRUE,border_color=NA,show_rownames = T)
>
>
>
> I want to extract the row names in the same order as shown in pheatmap and the z scores for them.
>
>
>
> So basically a numeric matrix instead of a figure. Can someone help me how this can be done
>
>
>
> Thanks
>
>
>
> Tanya
>
>
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