[R] Installing an Archived Package

[Evguenia Ignatova]

Excellent - I will know where to look for the required packages next time. I actually was able to install everything successfully in Sierra in the end, interestingly enough. 

Found the plain text option and will definitely post to the Mac-specific mailing list when appropriate.

Thank you,
Evguenia

> On May 16, 2018, at 4:07 PM, David Winsemius <dwinsemius using comcast.net> wrote:
> 
> 
>> On May 16, 2018, at 2:15 PM, Evguenia Ignatova <evg.ignatova using gmail.com> wrote:
>> 
>> Hello again,
>> 
>> I did not expect the browser to automatically extract, so I changed the Safari setting and it downloaded as a “gz” file.
>> 
>> It is clear now that R is finding the package but I get a different error as follows:
>> 
>>> install.packages("polycor_0.7-8.tar.gz", repos=NULL, type="source")
>> ERROR: dependency ‘mvtnorm’ is not available for package ‘polycor’
> 
> Look at the CRAN page for polycor.
> 
> https://cran.r-project.org/web/packages/polycor/index.html
> 
> It lists the packages that it need functions from under the Line starting with: Imports from:
> 
> Install all those packages (and any non-base dependencies they might have obviously need to be installed first), then install `polycor`. It's possible thay you may also need the Xcode and other development tools also from the same era, since mvtnorm _does_ require compilation. That might require some digging through Apple's archives.  You probably will _not_ want to update your MacOS to either Sierra or High Sierra. I _think_ that El Capitan would still be able to run R 3.2.1 but I'm not sure. Subsequent problems should be referred to the R-SIG-mac mailing list, and you should read the Posting Guide and set your mail client (probably Mail.app) so that it sends pain text.
> l
> It really does seem that IBM ought to maintain a mirror of CRAN with binaries from the distant past era when R 3.2 was the current version.
> 
> Best of luck, but I have my doubts about whether this will be feasible.
> 
> 
>> * removing ‘/Library/Frameworks/R.framework/Versions/3.2/Resources/library/polycor’
>> Warning message:
>> In install.packages("polycor_0.7-8.tar.gz", repos = NULL, type = "source") :
>> installation of package ‘polycor_0.7-8.tar.gz’ had non-zero exit status
>> 
>> I get the same error when I try Rui’s way of accessing the file.
>> 
>> Suggestions online are along the lines of installing the dependencies separately, but I am not sure how to go about separating the file into its dependencies?
> 
> You don't "separate the file". You look up and install dependencies first.
> 
> -- 
> David.
>> 
>> Thank you so much!
>> 
>> Evguenia
>> 
>>> On May 16, 2018, at 1:58 PM, Richard M. Heiberger <rmh using temple.edu> wrote:
>>> 
>>> You can tell Macintosh not to automatically unpack tar.gz files.
>>> 
>>> https://apple.stackexchange.com/questions/961/how-to-stop-safari-from-unzipping-files-after-download <https://apple.stackexchange.com/questions/961/how-to-stop-safari-from-unzipping-files-after-download>
>>> 
>>> 
>>> On Wed, May 16, 2018 at 11:24 AM, Evguenia Ignatova
>>> <evg.ignatova using gmail.com <mailto:evg.ignatova using gmail.com>> wrote:
>>>> Hello,
>>>> 
>>>> I am having difficulty installing the most recent compatible version of the “polycor" package (0.7-8), for R 3.2.1 on my Mac. Here is the package source page: https://cran.r-project.org/src/contrib/Archive/polycor/ <https://cran.r-project.org/src/contrib/Archive/polycor/> <https://cran.r-project.org/src/contrib/Archive/polycor/ <https://cran.r-project.org/src/contrib/Archive/polycor/>>.
>>>> 
>>>> This version of R is necessary for the R Essentials for the IBM Statistical Package for Social Sciences (SPSS) extension. I found this thread on the problem (http://r.789695.n4.nabble.com/Installing-polycor-package-td4726101.html <http://r.789695.n4.nabble.com/Installing-polycor-package-td4726101.html> <http://r.789695.n4.nabble.com/Installing-polycor-package-td4726101.html <http://r.789695.n4.nabble.com/Installing-polycor-package-td4726101.html>>) but it does not offer much help as my SPSS version will not recognize the most recent versions of R.
>>>> 
>>>> The polycor package is not available in the repository of R 3.2.1. Here is the code I tried to install the package from the archive and the errors I received:
>>>> 
>>>>> install.packages("/polycor_0.7-8.tar", repos=NULL, type="source")
>>>> Warning: invalid package ‘/polycor_0.7-8.tar’
>>>> Error: ERROR: no packages specified
>>>> Warning message:
>>>> In install.packages("/polycor_0.7-8.tar", repos = NULL, type = "source") :
>>>> installation of package ‘/polycor_0.7-8.tar’ had non-zero exit status
>>>>> install.packages("https://cran.r-project.org/src/contrib/Archive/polycor/polycor_0.7-8.tar.gz", repos=NULL, type="source")
>>>> Error in download.file(p, destfile, method, mode = "wb", ...) :
>>>> unsupported URL scheme
>>>> 
>>>> Any ideas for other alternatives would be greatly appreciated. Thank you for your time!
>>>> 
>>>> Best,
>>>> Evguenia
>>>>      [[alternative HTML version deleted]]
>>>> 
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>> 
>> 
>> 	[[alternative HTML version deleted]]
>> 
>> ______________________________________________
>> R-help using r-project.org mailing list -- To UNSUBSCRIBE and more, see
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>> PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
>> and provide commented, minimal, self-contained, reproducible code.
>