[R] Package for Molecular Properties

[Jeff Newmiller]

On Thu, 3 May 2018, Bert Gunter wrote:

> ... In addition, you may wish to also post on the Bioconductor list
> for this sort of thing.

... where "this sort of thing" is the original subject matter "molecular 
properties" rather than the sidebar about the sos package which is 
probably better discussed here.

FWIW I don't think the sos package will help you search Bioconductor.

>
> -- Bert
> Bert Gunter
>
> "The trouble with having an open mind is that people keep coming along
> and sticking things into it."
> -- Opus (aka Berkeley Breathed in his "Bloom County" comic strip )
>
>
> On Thu, May 3, 2018 at 12:58 AM, Spencer Graves
> <spencer.graves using effectivedefense.org> wrote:
>>
>> library(sos)
>>
>>
>> (mp <- findFn('{molecular properties}'))
>>
>>
>>       ** found 7 matches in 4 packages and opened two web pages in my
>> default browser with (a) the 7 matches and (b) the 4 packages. The first
>> function was something for amino acids, like you suggested.  Two others
>> returned compound and substance information from PubChem.
>>
>>
>>       Does this help?
>>       Spencer
>>
>>
>>
>> On 2018-05-02 19:17, bbb_aaa using verizon.net wrote:
>>>
>>> All
>>>
>>> Is there a package or library that will, given a nucleotide sequence
>>>
>>> 1. calculate the extinction coefficient at 260 nm for (Beer-Lambert's law)
>>> 2. calculate molecular weight
>>> 3. return it's complementary sequence
>>>
>>> I was able to find several packages that can do similar calculations for
>>> an amino acid sequence for proteins but none for nucleic acids.
>>>
>>> Any pointers, etc. would be great.
>>>
>>> thank you in advance
>>> Indr
>>>
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>>> and provide commented, minimal, self-contained, reproducible code.
>>
>>
>> ______________________________________________
>> R-help using r-project.org mailing list -- To UNSUBSCRIBE and more, see
>> https://stat.ethz.ch/mailman/listinfo/r-help
>> PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
>> and provide commented, minimal, self-contained, reproducible code.
>
> ______________________________________________
> R-help using r-project.org mailing list -- To UNSUBSCRIBE and more, see
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.
>

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