[R] Package for Molecular Properties

[Bert Gunter]

... In addition, you may wish to also post on the Bioconductor list
for this sort of thing.

-- Bert
Bert Gunter

"The trouble with having an open mind is that people keep coming along
and sticking things into it."
-- Opus (aka Berkeley Breathed in his "Bloom County" comic strip )


On Thu, May 3, 2018 at 12:58 AM, Spencer Graves
<spencer.graves at effectivedefense.org> wrote:
>
> library(sos)
>
>
> (mp <- findFn('{molecular properties}'))
>
>
>       ** found 7 matches in 4 packages and opened two web pages in my
> default browser with (a) the 7 matches and (b) the 4 packages. The first
> function was something for amino acids, like you suggested.  Two others
> returned compound and substance information from PubChem.
>
>
>       Does this help?
>       Spencer
>
>
>
> On 2018-05-02 19:17, bbb_aaa at verizon.net wrote:
>>
>> All
>>
>> Is there a package or library that will, given a nucleotide sequence
>>
>> 1. calculate the extinction coefficient at 260 nm for (Beer-Lambert's law)
>> 2. calculate molecular weight
>> 3. return it's complementary sequence
>>
>> I was able to find several packages that can do similar calculations for
>> an amino acid sequence for proteins but none for nucleic acids.
>>
>> Any pointers, etc. would be great.
>>
>> thank you in advance
>> Indr
>>
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>
>
> ______________________________________________
> R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.