[R] comparition of occurrence of multiple variables between two dataframes

Wed Sep 13 09:16:53 CEST 2017

Hi

Instead of posting head(data100) try to copy output of

dput(head(data100))

directly to your post.

This can show us your exact data together with their modes.

And switch to plain text emails, HTML formating results in quite messy mails.

Cheers
Petr

> -----Original Message-----
> From: R-help [mailto:r-help-bounces at r-project.org] On Behalf Of Céline
> Lüscher
> Sent: Tuesday, September 12, 2017 1:58 PM
> To: Suzen, Mehmet <msuzen at gmail.com>
> Cc: r-help at r-project.org
> Subject: Re: [R] comparition of occurrence of multiple variables between two
> dataframes
>
> Yes of course, I can share this short view of the datas.
>
> Here is the head() of data100, containing all the trees with a final value higher
> than 100 :
>
> CV11
> CV12
> CV13
> CV14
> CV15
> CV21
> CV22
> CV23
> CV24
> CV25
> CV26
> CV31
> CV32
> CV33
> CV41
> CV42
> CV43
> CV44
> CV51
> CV52
> IN11
> IN12
> IN13
> 1291
> 0
> 0
> 0
> 1
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 1083
> 0
> 4
> 0
> 1
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 3919
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 2
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 14685
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 1
> 0
> 0
> 4021
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 1
> 0
> 0
> 5452
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
>
> IN14
> IN21
> IN22
> IN23
> IN31
> IN32
> IN33
> IN34
> BA11
> BA12
> BA21
> DE11
> DE12
> DE13
> DE14
> DE15
> GR11
> GR12
> GR13
> GR21
> GR22
> GR31
> GR32
> 1291
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 30
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 1083
> 3
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 3919
> 0
> 0
> 1
> 0
> 2
> 0
> 0
> 0
> 2
> 0
> 0
> 0
> 3
> 0
> 0
> 0
> 0
> 0
> 0
> 11
> 0
> 0
> 0
> 14685
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 11
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 4021
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 11
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 5452
> 0
> 0
> 1
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 2
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
>
> EP11
> EP12
> EP13
> EP14
> EP21
> EP31
> EP32
> EP33
> EP34
> EP35
> NE11
> NE12
> NE21
> OT11
> OT12
> OT21
> OT22
> ecoval
>
>
>
>
>
> 1291
> 0
> 8
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 1192
>
>
>
>
>
> 1083
> 0
> 8
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 424
>
>
>
>
>
> 3919
> 1
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 380
>
>
>
>
>
> 14685
> 0
> 1
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 370
>
>
>
>
>
> 4021
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 1
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 358
>
>
>
>
>
> 5452
> 0
> 0
> 0
> 0
> 0
> 0
> 1
> 0
> 0
> 11
> 0
> 0
> 0
> 0
> 1
> 0
> 0
> 356
>
>
>
>
> The columns are the possible structures found on a tree (cavity, scar…)
>
> And the same for the data0 :
>
> CV11
> CV12
> CV13
> CV14
> CV15
> CV21
> CV22
> CV23
> CV24
> CV25
> CV26
> CV31
> CV32
> CV33
> CV41
> CV42
> CV43
> CV44
> CV51
> CV52
> IN11
> IN12
> IN13
> 4728
> 0
> 0
> 0
> 1
> 0
> 0
> 0
> 3
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 1
> 1
> 0
> 0
> 5339
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 1
> 0
> 0
> 11766
> 0
> 0
> 0
> 0
> 0
> 0
> 1
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 796
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 3561
> 0
> 0
> 0
> 1
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 1
> 0
> 0
> 0
> 0
> 10581
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 1
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
>
> IN14
> IN21
> IN22
> IN23
> IN31
> IN32
> IN33
> IN34
> BA11
> BA12
> BA21
> DE11
> DE12
> DE13
> DE14
> DE15
> GR11
> GR12
> GR13
> GR21
> GR22
> GR31
> GR32
> 4728
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 1
> 0
> 0
> 0
> 0
> 0
> 0
> 5339
> 1
> 0
> 1
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 1
> 0
> 0
> 0
> 0
> 0
> 0
> 11766
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 1
> 1
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 796
> 1
> 1
> 0
> 0
> 1
> 0
> 0
> 0
> 1
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 3561
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 3
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 10581
> 0
> 0
> 0
> 1
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 1
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
>
> EP11
> EP12
> EP13
> EP14
> EP21
> EP31
> EP32
> EP33
> EP34
> EP35
> NE11
> NE12
> NE21
> OT11
> OT12
> OT21
> OT22
> ecoval
>
>
>
>
>
> 4728
> 0
> 0
> 1
> 0
> 0
> 1
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 99
>
>
>
>
>
> 5339
> 0
> 1
> 0
> 0
> 0
> 0
> 1
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 99
>
>
>
>
>
> 11766
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 1
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 1
> 99
>
>
>
>
>
> 796
> 1
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 98
>
>
>
>
>
> 3561
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 98
>
>
>
>
>
> 10581
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 1
> 0
> 0
> 0
> 0
> 0
> 0
> 0
> 1
> 0
> 98
>
>
>
>
>
> In short, the question is about to find a test to compare the occurrence of the
> structures between the group higher than 100 and the group under 100.
>
> Thank you for your help,
> C.
>
>
>
> Gesendet von Mail für Windows 10
>
> Von: Suzen, Mehmet
> Gesendet: mardi, 12 septembre 2017 13:24
> An: Céline Lüscher
> Cc: r-help at r-project.org
> Betreff: Re: [R] comparition of occurrence of multiple variables between two
> dataframes
>
> Do you have a simplified example with a code? It is not clear to me what do
> you mean by tree but if you refer to tree data structure, maybe you could
> change the data structure to tree
> (https://cran.r-project.org/web/packages/data.tree/vignettes/data.tree.html)
> and try to write comparison of two tree objects. It might be easier that
> data.frame alone.
>
> On 12 September 2017 at 12:27, Céline Lüscher <c-luescher at hispeed.ch>
> wrote:
> > Hi everyone, I need your help to solve a problem with occurrence and two
> dataframes.
> > I have an excel table of 15200 lines. Each line correspond to a tree analyzed
> for its structures. I have all the structures in columns (48 structures). The
> occurrence of these structures has been counted on every tree. For example,
> the tree 12607 has 3 structures CV11, 1 structure IN12 and none (0) of the rest
> of all the other structures. The very last column is the value given to the tree,
> according to the structures found on it (each structure giving a number of point
> to the tree by its presence on it).
> > The question is: Are there some structures, or combination of structures,
> which give a high value to the tree ? Of course, according to the value of each
> structure, we can see which one has a higher value than the others (ex:
> structure CV11 has a value of 15, structure IN12 has a value of 4). But what I
> want to know is, if we take all the trees having a final value higher than 100
> (we create a new dataframe "data100"), and we compare with the trees having
> a final value under 100 (we create another dataframe "data0"), can we find a
> significant difference in the number and occurrence of structures found on
> these trees? And which structure is related to trees with a higher value than
> 100 ?
> > For now, I have only a visual answer to the question. I did two boxplot of the
> data100 and data0, and I have seen some différences : 2 structures are only
> found in the data100, which can be caracteristic of a final value higher than
> 100. The problem is that I’m looking for a test to prove this.
> > If you have any idea or proposition for solving this problem.. it will be great!
> > Best wishes,
> > C.
> >
> >
> > Gesendet von Mail für Windows 10
> >
> >
> >         [[alternative HTML version deleted]]
> >
> > ______________________________________________
> > R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see
> > https://stat.ethz.ch/mailman/listinfo/r-help
> > PLEASE do read the posting guide
> > http://www.R-project.org/posting-guide.html
> > and provide commented, minimal, self-contained, reproducible code.
>
>
>       [[alternative HTML version deleted]]
>
> ______________________________________________
> R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.

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