[R] post_processor in rmarkdown not working

[Thierry Onkelinx]

Dear all,

I'm trying to write a post_processor() for a custom rmarkdown format. The
goal of the post_processor() is to modify the latex file before it is
compiled. For some reason the post_processor() is not run. The
post_processor() does work when I run it manually on the tex file.

Any suggestions on what I'm doing wrong? Below is the relevant snippet of
the code. The full code is available at
https://github.com/inbo/INBOmd/blob/post_processor/R/rsos_article.R
https://github.com/inbo/INBOmd/blob/post_processor/inst/rmarkdown/templates/rsos_article/skeleton/skeleton.Rmd
is an Rmd is a MWE that fails compile because the post_processor() is not
run.

Best regards,

Thierry

  post_processor <- function(
    metadata, input_file, output_file, clean, verbose
  ) {
    text <- readLines(output_file, warn = FALSE)

    # set correct text in fmtext environment
    end_first_page <- grep("\\\\EndFirstPage", text) #nolint
    if (length(end_first_page) == 1) {
      maketitle <- grep("\\\\maketitle", text) #nolint
      text <- c(
        text[1:(maketitle - 1)],
        "\\begin{fmtext}",
        text[(maketitle + 1):(end_first_page - 1)],
        "\\end{fmtext}",
        "\\maketitle",
        text[(end_first_page + 1):length(text)]
      )
      writeLines(enc2utf8(text), output_file, useBytes = TRUE)
    }
    output_file
  }

  output_format(
    knitr = knitr_options(
      opts_knit = list(
        width = 60,
        concordance = TRUE
      ),
      opts_chunk = opts_chunk,
      knit_hooks = knit_hooks
    ),
    pandoc = pandoc_options(
      to = "latex",
      latex_engine = "xelatex",
      args = args,
      keep_tex = keep_tex
    ),
    post_processor = post_processor,
    clean_supporting = !keep_tex
  )



ir. Thierry Onkelinx
Instituut voor natuur- en bosonderzoek / Research Institute for Nature and
Forest
team Biometrie & Kwaliteitszorg / team Biometrics & Quality Assurance
Kliniekstraat 25
1070 Anderlecht
Belgium

To call in the statistician after the experiment is done may be no more
than asking him to perform a post-mortem examination: he may be able to say
what the experiment died of. ~ Sir Ronald Aylmer Fisher
The plural of anecdote is not data. ~ Roger Brinner
The combination of some data and an aching desire for an answer does not
ensure that a reasonable answer can be extracted from a given body of data.
~ John Tukey

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