[R] Using R and Python together

[Ulrik Stervbo]

'Snakemake' (https://snakemake.readthedocs.io/en/stable/) was created to
ease pipelines through different tools so it might be useful.

In all honesty I only know of Snakemake, so it might be the completely
wrong horse.

HTH
Ulrik

On Fri, 31 Mar 2017 at 06:01 Wensui Liu <liuwensui at gmail.com> wrote:

> How about pyper?
>
> On Thu, Mar 30, 2017 at 10:42 PM Kankana Shukla <shukla.kank at gmail.com>
> wrote:
>
> > Hello,
> >
> > I am running a deep neural network in Python.  The input to the NN is the
> > output from my R code. I am currently running the python script and
> calling
> > the R code using a subprocess call, but this does not allow me to
> > recursively change (increment) parameters used in the R code that would
> be
> > the inputs to the python code.  So in short, I would like to follow this
> > automated process:
> >
> >    1. Parameters used in R code generate output
> >    2. This output is input to Python code
> >    3. If output of Python code > x,  stop
> >    4. Else, increment parameters used as input in R code (step 1) and
> >    repeat all steps
> >
> > I have searched for examples using R and Python together, and rpy2 seems
> > like the way to go, but is there another (easier) way to do it?  I would
> > highly appreciate the help.
> >
> > Thanks in advance,
> >
> > Kankana
> >
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> >
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> >
>
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>
> ______________________________________________
> R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide
> http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.
>

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