[R] DESeq2 pairwise compasion
jdnewmil at dcn.davis.ca.us
Thu Jun 8 18:32:52 CEST 2017
I think you are asking on the wrong mailing list. Perhaps you should be asking this question on the Bioconductor mailing list?
Sent from my phone. Please excuse my brevity.
On June 8, 2017 7:35:55 AM PDT, Yogesh Gupta <yogesh2cute at gmail.com> wrote:
>There are two line 216 and 218
>Three development stages 5 WEEK (5W), 7W, 9W.
>Three tissue: Ca, Co, Pa
>each with 2 biological replicate.
>With two biological replicate. I want to do differential gene
>analysis using DESeq2 so I tried these codes after reading about
>,my aim is to do the pairwise comparison. how to make colData and
> 57894 35
>Now I am not sure how to construct a DESeqDataSet:
>dds <- DESeqDataSetFromMatrix(countData = countMatrix,
>colData = colData,
>design = ~ condition)
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