[R] cygwin1.dll problems when installing packages from source
Vivek Sutradhara
viveksutra at gmail.com
Sat Jun 3 13:00:29 CEST 2017
Hi,
As far as I can see, no.
On checking, I have confirmed that the only location of
cygwin1.dll is :
C:\Rtools\bin
Thanks
Vivek
2017-06-03 12:57 GMT+02:00 Duncan Murdoch <murdoch.duncan at gmail.com>:
> On 03/06/2017 6:31 AM, Vivek Sutradhara wrote:
>
>> Hi all,
>> I am having some problems in updating some packages from source. I start
>> with :
>> install.packages("Boom",lib="C:/RownLib",type="source")
>>
>> I get the following error message :
>>
>
> Do you have multiple copies of cygwin1.dll?
>
> Duncan Murdoch
>
>
>> * installing *source* package 'Boom' ...
>> ** package 'Boom' successfully unpacked and MD5 sums checked
>> ** libs
>>
>> *** arch - i386
>> c:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/R/R-34~1.0/include"
>> -I. -I../inst/include -IBmath -Imath/cephes -DNO_BOOST_THREADS
>> -DNO_BOOST_FILESYSTEM -DADD_ -DRLANGUAGE -I"C:/RownLib/BH/include"
>> -I"d:/Compiler/gcc-4.9.3/local330/include" -O2 -Wall -mtune=core2
>> -c Models/Bart/Bart.cpp -o Models/Bart/Bart.o
>> 0 [main] make (3304) c:\Rtools\bin\make.exe: *** fatal error -
>> cygheap base mismatch detected - 0xD57408/0xC47408.
>> This problem is probably due to using incompatible versions of the cygwin
>> DLL.
>> Search for cygwin1.dll using the Windows Start->Find/Search facility
>> and delete all but the most recent version. The most recent version
>> *should*
>> reside in x:\cygwin\bin, where 'x' is the drive on which you have
>> installed the cygwin distribution. Rebooting is also suggested if you
>> are unable to find another cygwin DLL.
>> 0 [main] make 9868 fork: child -1 - forked process 3304 died
>> unexpectedly, retry 0, exit code 0xC0000142, errno 11
>> make: vfork: Resource temporarily unavailable
>> c:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/R/R-34~1.0/include"
>> -I. -I../inst/include -IBmath -Imath/cephes -DNO_BOOST_THREADS
>> -DNO_BOOST_FILESYSTEM -DADD_ -DRLANGUAGE -I"C:/RownLib/BH/include"
>> -I"d:/Compiler/gcc-4.9.3/local330/include" -O2 -Wall -mtune=core2
>> -c Models/Bart/GaussianBartModel.cpp -o
>> Models/Bart/GaussianBartModel.o
>> 0 [main] make (5256) c:\Rtools\bin\make.exe: *** fatal error -
>> cygheap base mismatch detected - 0xD57408/0xEB7408.
>> This problem is probably due to using incompatible versions of the cygwin
>> DLL.
>> Search for cygwin1.dll using the Windows Start->Find/Search facility
>> and delete all but the most recent version. The most recent version
>> *should*
>> reside in x:\cygwin\bin, where 'x' is the drive on which you have
>> installed the cygwin distribution. Rebooting is also suggested if you
>> are unable to find another cygwin DLL.
>> 31956 [main] make 9868 fork: child -1 - forked process 5256 died
>> unexpectedly, retry 0, exit code 0xC0000142, errno 11
>> make: vfork: Resource temporarily unavailable
>> c:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/R/R-34~1.0/include"
>> -I. -I../inst/include -IBmath -Imath/cephes -DNO_BOOST_THREADS
>> -DNO_BOOST_FILESYSTEM -DADD_ -DRLANGUAGE -I"C:/RownLib/BH/include"
>> -I"d:/Compiler/gcc-4.9.3/local330/include" -O2 -Wall -mtune=core2
>> -c Models/Bart/GaussianLinearBartModel.cpp -o
>> Models/Bart/GaussianLinearBartModel.o
>> 0 [main] make (2308) c:\Rtools\bin\make.exe: *** fatal error -
>> cygheap base mismatch detected - 0xD57408/0xDB7408.
>> This problem is probably due to using incompatible versions of the cygwin
>> DLL.
>> Search for cygwin1.dll using the Windows Start->Find/Search facility
>> and delete all but the most recent version. The most recent version
>> *should*
>> reside in x:\cygwin\bin, where 'x' is the drive on which you have
>> installed the cygwin distribution. Rebooting is also suggested if you
>> are unable to find another cygwin DLL.
>> 65040 [main] make 9868 fork: child -1 - forked process 2308 died
>> unexpectedly, retry 0, exit code 0xC0000142, errno 11
>> make: vfork: Resource temporarily unavailable
>> c:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/R/R-34~1.0/include"
>> -I. -I../inst/include -IBmath -Imath/cephes -DNO_BOOST_THREADS
>> -DNO_BOOST_FILESYSTEM -DADD_ -DRLANGUAGE -I"C:/RownLib/BH/include"
>> -I"d:/Compiler/gcc-4.9.3/local330/include" -O2 -Wall -mtune=core2
>> -c Models/Bart/LogitBartModel.cpp -o Models/Bart/LogitBartModel.o
>> 0 [main] sh (1836) C:\Rtools\bin\sh.exe: *** fatal error -
>> cygheap base mismatch detected - 0xD57408/0xDD7408.
>> This problem is probably due to using incompatible versions of the cygwin
>> DLL.
>> Search for cygwin1.dll using the Windows Start->Find/Search facility
>> and delete all but the most recent version. The most recent version
>> *should*
>> reside in x:\cygwin\bin, where 'x' is the drive on which you have
>> installed the cygwin distribution. Rebooting is also suggested if you
>> are unable to find another cygwin DLL.
>> make: *** [Models/Bart/LogitBartModel.o] Error 127
>> Warning: running command 'make -f "Makevars" -f
>> "C:/R/R-34~1.0/etc/i386/Makeconf" -f
>> "C:/R/R-34~1.0/share/make/winshlib.mk" -f
>> "C:/Users/john/Documents/.R/Makevars" CXX='$(CXX11) $(CXX11STD)'
>> CXXFLAGS='$(CXX11FLAGS)' CXXPICFLAGS='$(CXX11PICFLAGS)'
>> SHLIB_LDFLAGS='$(SHLIB_CXX11LDFLAGS)' SHLIB_LD='$(SHLIB_CXX11LD)'
>> SHLIB="Boom.dll" ' had status 2
>> ERROR: compilation failed for package 'Boom'
>> * removing 'C:/RownLib/Boom'
>> * restoring previous 'C:/RownLib/Boom'
>> Warning in install.packages :
>> running command '"C:/R/R-34~1.0/bin/x64/R" CMD INSTALL -l
>> "C:\RownLib" C:\TMP\Rtmpegxnel/downloaded_packages/Boom_0.7.tar.gz'
>> had status 1
>> Warning in install.packages :
>> installation of package ‘Boom’ had non-zero exit status
>>
>>
>> sessionInfo()R version 3.4.0 (2017-04-21)
>>>
>> Platform: x86_64-w64-mingw32/x64 (64-bit)
>> Running under: Windows >= 8 x64 (build 9200)
>>
>> Matrix products: default
>>
>> locale:
>> [1] LC_COLLATE=Swedish_Sweden.1252 LC_CTYPE=Swedish_Sweden.1252
>> LC_MONETARY=Swedish_Sweden.1252 LC_NUMERIC=C
>> [5] LC_TIME=Swedish_Sweden.1252
>>
>> attached base packages:
>> [1] stats graphics grDevices utils datasets methods base
>>
>> loaded via a namespace (and not attached):
>> [1] shiny_1.0.3 compiler_3.4.0 R6_2.2.1 htmltools_0.3.6
>> tools_3.4.0 withr_1.0.2 Rcpp_0.12.11 memoise_1.1.0
>> [9] git2r_0.18.0 digest_0.6.12 xtable_1.8-2 httpuv_1.3.3
>> mime_0.5 ghit_0.2.17 devtools_1.13.2
>>
>> On checking, I have confirmed that the only location of
>> cygwin1.dll is :
>> C:\Rtools\bin
>>
>> I have not had any similiar problems before prior R3.4. The only new
>> installation that I have done recently is python with
>> Anaconda2. But I can't see any cygwin1.dll there. I wonder what
>> the problem is. I will appreciate any help that I can get.
>>
>> Thanks,
>>
>> Vivek
>>
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>>
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>> ng-guide.html
>> and provide commented, minimal, self-contained, reproducible code.
>>
>>
>
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