[R] Installing Cardinal Workflows
Shadrack Mutuku
shadymutu at gmail.com
Wed Apr 19 05:18:01 CEST 2017
I have successfully installed the cardinal package but having issues
installing cardinal workflows. I am getting the following error message on
my console:
> source("http://bioconductor.org/biocLite.R")
Bioconductor version 3.4 (BiocInstaller 1.24.0), ?biocLite for help
> biocLite("CardinalWorkflows")
BioC_mirror: https://bioconductor.org
Using Bioconductor 3.4 (BiocInstaller 1.24.0), R 3.3.3 (2017-03-06).
Installing package(s) ‘CardinalWorkflows’
installing the source package ‘CardinalWorkflows’
trying URL
'https://bioconductor.org/packages/3.4/data/experiment/src/contrib/CardinalWorkflows_1.6.0.tar.gz'
Content type 'application/x-gzip' length 150031609 bytes (143.1 MB)
downloaded 143.1 MB
'C:\Program' is not recognized as an internal or external command,
operable program or batch file.
The downloaded source packages are in
‘C:\Users\a1708277\AppData\Local\Temp\RtmpIbY3aM\downloaded_packages’
installation path not writeable, unable to update packages: cluster,
lattice,
survival
Warning messages:
1: running command '"C:/Program Files/R/R-3.3.3/bin/x64/R" CMD INSTALL -l
"\\UOFA\USERS$\users7\a1708277\R\win-library\3.3"
C:\Users\a1708277\AppData\Local\Temp\RtmpIbY3aM/downloaded_packages/CardinalWorkflows_1.6.0.tar.gz'
had status 1
2: In install.packages(pkgs = doing, lib = lib, ...) :
installation of package ‘CardinalWorkflows’ had non-zero exit status
> library(CardinalWorkflows)
Error in library(CardinalWorkflows) :
there is no package called ‘CardinalWorkflows’
*Please help. Thanks*
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