[R] readr to generate tibble from a character matrix
Ben Tupper
btupper at bigelow.org
Thu Apr 6 16:40:50 CEST 2017
Hello,
I have a workflow yields a character matrix that I convert to a tibble. Here is a simple example.
library(tibble)
library(readr)
m <- matrix(c(letters[1:12], 1:4, (11:14 + 0.2)), ncol = 5)
colnames(m) <- LETTERS[1:5]
x <- as_tibble(m)
# # A tibble: 4 × 5
# A B C D E
# <chr> <chr> <chr> <chr> <chr>
# 1 a e i 1 11.2
# 2 b f j 2 12.2
# 3 c g k 3 13.2
# 4 d h l 4 14.2
The workflow output columns can be a mix of a known set column outputs. Some of the columns really should be converted to non-character types before I proceed. Right now I explictly set the column classes with something like this...
mode(x[['D']]) <- 'integer'
mode(x[['E']]) <- 'numeric'
# # A tibble: 4 × 5
# A B C D E
# <chr> <chr> <chr> <int> <dbl>
# 1 a e i 1 11.2
# 2 b f j 2 12.2
# 3 c g k 3 13.2
# 4 d h l 4 14.2
I wonder if there is a way to use the read_* functions in the readr package to read the character matrix into a tibble directly which would leverage readr's excellent column class guessing. I can see in the vignette ( https://cran.r-project.org/web/packages/readr/vignettes/readr.html ) that I'm not too far off in thinking this could be done (step 1 tantalizingly says 'The flat file is parsed into a rectangular matrix of strings.')
I know that I could either write the matrix to a file or paste it all into a character vector and then use read_* functions, but I confess I am looking for a straighter path by simply passing the matrix to a function like readr::read_matrix() or the like.
Thanks!
Ben
Ben Tupper
Bigelow Laboratory for Ocean Sciences
60 Bigelow Drive, P.O. Box 380
East Boothbay, Maine 04544
http://www.bigelow.org
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