[R] Error In DESeq installation

Martin Morgan martin.morgan at roswellpark.org
Mon Oct 24 12:21:48 CEST 2016

On 10/23/2016 10:13 PM, Yogesh Gupta wrote:
> Dear All,
> I am getting error in DESeq installation in R.
> package ‘DESeq’ is not available (for R version 3.3.1)
>> source("http://www.Bioconductor.org/biocLite.R")
> Bioconductor version 3.4 (BiocInstaller 1.24.0), ?biocLite for help
>> biocLite("BiocUpgrade")
> Error: Bioconductor version 3.4 cannot be upgraded with R version 3.3.1
> Can you suggest me I How I can resolve it.

Ask questions about Bioconductor packages on the Bioconductor support forum


DESeq was replaced by DESeq2, but is still available; provide (on the 
Bioconductor support site) the complete output of the installation 
attempt and sessionInfo().

'BiocUpgrade' is to update to a more recent version of Bioconductor. 
There is a 'devel' version that is m ore recent that 3.4, but it 
requires R-devel.


> Thanks
> Yogesh
> *Yogesh Gupta*
> *Postdoctoral Researcher*
> *Department of Biological Science*
> *Seoul National University*
> *Seoul, South Korea*
> web) http://biosci.snu.ac.kr/jiyounglee
> *Cell No. +82-10-6453-0716*
> 	[[alternative HTML version deleted]]
> ______________________________________________
> R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.

This email message may contain legally privileged and/or...{{dropped:2}}

More information about the R-help mailing list