[R] manage algorithm in R studio

[Boris Steipe]

This is probably fun to write, but it's been done many times before. For practical purposes, use the pairwiseAlignment() function in the Biostrings package, distributed by the bioconductor project.

cf.: https://www.bioconductor.org/packages/3.3/bioc/vignettes/Biostrings/inst/doc/PairwiseAlignments.pdf

Cheers,
Boris



On Feb 28, 2016, at 12:44 PM, Jeff Newmiller <jdnewmil at dcn.davis.ca.us> wrote:

> Quite possibly, if Google is to be trusted. 
> -- 
> Sent from my phone. Please excuse my brevity.
> 
> On February 28, 2016 1:03:28 AM PST, "Matej Matjašec" <matej.matjasec at gmail.com> wrote:
>> Hello,
>> 
>> I need some instruction about R studio library, that using algorithm
>> Needleman - Wunsch and Smith - Waterman. How can I present this
>> algorithm
>> in R, calculate maximum score sequence alignment ?
>> 
>> It is possible that things in R?
>> 
>> Thank you very much in advance for your reply.
>> 
>> Greetings, Matej
>> 
>> 	[[alternative HTML version deleted]]
>> 
>> ______________________________________________
>> R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see
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>> and provide commented, minimal, self-contained, reproducible code.
> 
> 	[[alternative HTML version deleted]]
> 
> ______________________________________________
> R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.