[R] FD package

Jeff Newmiller jdnewmil at dcn.davis.ca.us
Mon Feb 22 20:54:30 CET 2016


"data" is the name of a function in base R. It is not a good idea to use 
that as the name of an actual data object (to which the "$" operator is 
being applied here). It is not clear from what you have provided what 
variable names you are working with... you are not communicating yet using 
reproducible examples, so you are depending on our psychic powers to fill 
in the gaps, which is not likely to work reliably. I suspect that Stephen 
used the generic term "data" since he did not know what variable name you 
were actually using.

http://stackoverflow.com/questions/5963269/how-to-make-a-great-r-reproducible-example

On Mon, 22 Feb 2016, Fabio Monteiro wrote:

>> hist(data$FRic)
> Error in data$FRic : object of type 'closure' is not subsettable
>
> 2016-02-22 14:10 GMT+00:00 stephen sefick <ssefick at gmail.com>:
>
>> Please see ?dput. What you provided is not a minimal, reproducible example
>> (i.e., there is no R code).
>>
>> What kind of plot are you trying to plot? hist(data$FRic) will plot your
>> data. I guess we need more information to be helpful.
>>
>>
>> On Mon, Feb 22, 2016 at 8:03 AM, Fabio Monteiro <
>> fabio.monteiro1992 at gmail.com> wrote:
>>
>>> This is the output.
>>>
>>> I want to plot, for example FRic
>>>
>>> $nbsp
>>>  com1  com2  com3  com4  com5  com6  com7  com8  com9 com10 com11 com12
>>> com13 com14 com15 com16
>>>    17    21    18    12    15    20    16    12    18    15    18    16
>>>  10    11    17    20
>>> com17 com18 com19 com20 com21 com22 com23 com24 com25 com26 com27 com28
>>> com29 com30 com31 com32
>>>     9    13    11    10    11    15    12    16    18    18    11    19
>>>  12    13    13    12
>>> com33 com34 com35 com36 com37 com38 com39 com40 com41 com42 com43 com44
>>> com45 com46 com47 com48
>>>    15    11    15     8     7    12    10     9    12    15    13    13
>>>  15    13    10    16
>>> com49 com50 com51 com52 com53 com54 com55 com56 com57 com58 com59 com60
>>> com61 com62 com63 com64
>>>    14    12    14    13    14    13    15    13    11    12    16    13
>>>   9     8    11    15
>>> com65 com66 com67 com68 com69 com70 com71 com72 com73 com74 com75 com76
>>> com77 com78 com79 com80
>>>    13    18    13    15    10    11    12    11    14     8    10    12
>>>  11    12    14    13
>>> com81 com82
>>>     9    12
>>>
>>> $sing.sp
>>>  com1  com2  com3  com4  com5  com6  com7  com8  com9 com10 com11 com12
>>> com13 com14 com15 com16
>>>    17    21    18    12    15    20    16    12    18    15    18    16
>>>  10    11    17    20
>>> com17 com18 com19 com20 com21 com22 com23 com24 com25 com26 com27 com28
>>> com29 com30 com31 com32
>>>     9    13    11    10    11    15    12    16    18    18    11    19
>>>  12    13    13    12
>>> com33 com34 com35 com36 com37 com38 com39 com40 com41 com42 com43 com44
>>> com45 com46 com47 com48
>>>    14    11    15     8     7    12    10     9    12    15    13    13
>>>  15    13    10    16
>>> com49 com50 com51 com52 com53 com54 com55 com56 com57 com58 com59 com60
>>> com61 com62 com63 com64
>>>    14    12    13    13    14    13    15    13    11    12    16    13
>>>   9     8    11    15
>>> com65 com66 com67 com68 com69 com70 com71 com72 com73 com74 com75 com76
>>> com77 com78 com79 com80
>>>    13    17    13    15    10    11    12    11    14     8    10    12
>>>  11    12    14    13
>>> com81 com82
>>>     9    12
>>>
>>> $FRic
>>>         com1         com2         com3         com4         com5
>>> com6         com7
>>> 3.669752e-04 6.898164e-04 6.893918e-04 3.935451e-05 1.436140e-04
>>> 1.012949e-03 2.934536e-04
>>>         com8         com9        com10        com11        com12
>>>  com13        com14
>>> 1.001556e-04 6.425547e-04 1.740235e-04 5.561802e-04 2.964362e-04
>>> 1.480860e-05 1.060512e-04
>>>        com15        com16        com17        com18        com19
>>>  com20        com21
>>> 4.121157e-04 5.346433e-04 1.108007e-06 5.726895e-05 8.593435e-06
>>> 1.452446e-05 1.855957e-05
>>>        com22        com23        com24        com25        com26
>>>  com27        com28
>>> 2.128971e-04 8.438329e-05 3.216279e-04 2.529525e-04 4.980317e-04
>>> 3.111325e-05 6.290088e-04
>>>        com29        com30        com31        com32        com33
>>>  com34        com35
>>> 3.559802e-05 5.907167e-05 8.906878e-05 2.510168e-05 1.929088e-04
>>> 1.234508e-04 2.784301e-04
>>>        com36        com37        com38        com39        com40
>>>  com41        com42
>>> 1.480560e-08 1.411752e-06 5.576549e-05 2.445569e-05 6.167242e-06
>>> 1.210002e-04 1.666034e-04
>>>        com43        com44        com45        com46        com47
>>>  com48        com49
>>> 1.203484e-04 7.347513e-05 8.991003e-05 8.691148e-05 6.718789e-05
>>> 1.357136e-04 1.821851e-04
>>>        com50        com51        com52        com53        com54
>>>  com55        com56
>>> 4.832203e-05 8.391627e-05 2.173971e-04 1.355160e-04 1.304425e-04
>>> 1.787888e-04 1.759204e-05
>>>        com57        com58        com59        com60        com61
>>>  com62        com63
>>> 9.307474e-05 1.185857e-04 2.776166e-04 1.277143e-04 5.905299e-06
>>> 9.606009e-08 1.019480e-04
>>>        com64        com65        com66        com67        com68
>>>  com69        com70
>>> 2.395355e-04 2.307081e-04 4.019309e-04 6.874506e-05 1.417622e-04
>>> 5.675463e-06 9.878848e-05
>>>        com71        com72        com73        com74        com75
>>>  com76        com77
>>> 6.907251e-05 8.938528e-05 2.493585e-04 1.214151e-09 2.419942e-05
>>> 1.183863e-04 7.457464e-05
>>>        com78        com79        com80        com81        com82
>>> 6.284563e-05 1.741100e-04 2.128749e-04 2.920847e-06 9.368270e-05
>>>
>>> $qual.FRic
>>> [1] 0.7035642
>>>
>>> $FEve
>>>      com1      com2      com3      com4      com5      com6      com7
>>>  com8      com9
>>> 0.2388515 0.3996566 0.3350494 0.2943431 0.3576785 0.3846561 0.4319967
>>> 0.5857688 0.4271764
>>>     com10     com11     com12     com13     com14     com15     com16
>>> com17     com18
>>> 0.3288544 0.4625139 0.4810921 0.3041395 0.5820621 0.6313595 0.5406627
>>> 0.2707035 0.4530424
>>>     com19     com20     com21     com22     com23     com24     com25
>>> com26     com27
>>> 0.3015171 0.5790744 0.7253301 0.5441404 0.4481694 0.6187607 0.5445650
>>> 0.4955940 0.5116752
>>>     com28     com29     com30     com31     com32     com33     com34
>>> com35     com36
>>> 0.5221560 0.5670513 0.4293040 0.4812907 0.4915317 0.3878949 0.4287726
>>> 0.2893205 0.5835605
>>>     com37     com38     com39     com40     com41     com42     com43
>>> com44     com45
>>> 0.7896749 0.5482274 0.4015703 0.5990018 0.5431955 0.6251919 0.6023954
>>> 0.4962892 0.3749658
>>>     com46     com47     com48     com49     com50     com51     com52
>>> com53     com54
>>> 0.4290664 0.4932756 0.5870607 0.3415984 0.3242199 0.4296702 0.4971491
>>> 0.3272834 0.4865427
>>>     com55     com56     com57     com58     com59     com60     com61
>>> com62     com63
>>> 0.3428716 0.4653631 0.5479140 0.5698272 0.4777804 0.4525375 0.5916255
>>> 0.4652363 0.4111973
>>>     com64     com65     com66     com67     com68     com69     com70
>>> com71     com72
>>> 0.3987632 0.3856989 0.3064660 0.4717288 0.3534531 0.4285679 0.6087836
>>> 0.3607790 0.5494437
>>>     com73     com74     com75     com76     com77     com78     com79
>>> com80     com81
>>> 0.4214327 0.4360703 0.3808632 0.2833824 0.2876808 0.3380949 0.3421757
>>> 0.2249389 0.6562824
>>>     com82
>>> 0.6041267
>>>
>>> $FDiv
>>>      com1      com2      com3      com4      com5      com6      com7
>>>  com8      com9
>>> 0.7423817 0.7458169 0.8679783 0.8226750 0.8373889 0.7877725 0.8070008
>>> 0.7379254 0.8131881
>>>     com10     com11     com12     com13     com14     com15     com16
>>> com17     com18
>>> 0.7050804 0.6976598 0.7512530 0.6806472 0.6994011 0.7276620 0.7870732
>>> 0.8793599 0.7562019
>>>     com19     com20     com21     com22     com23     com24     com25
>>> com26     com27
>>> 0.8983302 0.7681038 0.8163501 0.8198178 0.8489976 0.8922742 0.8442970
>>> 0.8269863 0.7891795
>>>     com28     com29     com30     com31     com32     com33     com34
>>> com35     com36
>>> 0.7569559 0.8674167 0.7436638 0.7317634 0.9541561 0.7466859 0.7087626
>>> 0.8006321 0.8511148
>>>     com37     com38     com39     com40     com41     com42     com43
>>> com44     com45
>>> 0.7729260 0.7509163 0.6905947 0.8466404 0.7677596 0.8791198 0.8211045
>>> 0.7259760 0.7992553
>>>     com46     com47     com48     com49     com50     com51     com52
>>> com53     com54
>>> 0.7573869 0.8788377 0.9036087 0.8287276 0.7762280 0.8064715 0.7775368
>>> 0.7828276 0.8151245
>>>     com55     com56     com57     com58     com59     com60     com61
>>> com62     com63
>>> 0.7503195 0.9213640 0.9141396 0.9150055 0.8348691 0.7271261 0.7875414
>>> 0.8338675 0.7070272
>>>     com64     com65     com66     com67     com68     com69     com70
>>> com71     com72
>>> 0.7189990 0.7043998 0.7768710 0.7264939 0.8140790 0.7532290 0.7309884
>>> 0.9190267 0.8540992
>>>     com73     com74     com75     com76     com77     com78     com79
>>> com80     com81
>>> 0.7531779 0.8520790 0.7649957 0.7319195 0.7578687 0.7915857 0.7600834
>>> 0.7303097 0.7693079
>>>     com82
>>> 0.7487281
>>>
>>> $FDis
>>>       com1       com2       com3       com4       com5       com6
>>> com7       com8
>>> 0.19178600 0.15352983 0.23419296 0.20315128 0.18604639 0.14348855
>>> 0.28989249 0.25752544
>>>       com9      com10      com11      com12      com13      com14
>>>  com15      com16
>>> 0.26174957 0.15962395 0.17907612 0.19642851 0.12827329 0.20114316
>>> 0.18128942 0.25731184
>>>      com17      com18      com19      com20      com21      com22
>>>  com23      com24
>>> 0.25855225 0.19576353 0.26366092 0.27728602 0.29546846 0.20720052
>>> 0.27212077 0.30880887
>>>      com25      com26      com27      com28      com29      com30
>>>  com31      com32
>>> 0.29440458 0.25396646 0.25647806 0.23422171 0.25464177 0.24311894
>>> 0.16182038 0.09958014
>>>      com33      com34      com35      com36      com37      com38
>>>  com39      com40
>>> 0.13095167 0.12983413 0.24224903 0.18239337 0.19817113 0.26320996
>>> 0.11766508 0.30940641
>>>      com41      com42      com43      com44      com45      com46
>>>  com47      com48
>>> 0.23583814 0.30624876 0.27750572 0.16747032 0.21445188 0.24327116
>>> 0.20589103 0.27339261
>>>      com49      com50      com51      com52      com53      com54
>>>  com55      com56
>>> 0.23614656 0.23678552 0.25641929 0.26260242 0.22516659 0.25243952
>>> 0.23674896 0.18732040
>>>      com57      com58      com59      com60      com61      com62
>>>  com63      com64
>>> 0.27202483 0.22947018 0.31342777 0.17997456 0.18461335 0.32429534
>>> 0.14840674 0.13731830
>>>      com65      com66      com67      com68      com69      com70
>>>  com71      com72
>>> 0.20437128 0.23298402 0.14830718 0.27194825 0.09289396 0.23196338
>>> 0.17920946 0.25265696
>>>      com73      com74      com75      com76      com77      com78
>>>  com79      com80
>>> 0.23525249 0.22171523 0.21972879 0.23523622 0.25336830 0.22477734
>>> 0.20430806 0.20674064
>>>      com81      com82
>>> 0.14270928 0.22673005
>>>
>>> $RaoQ
>>>       com1       com2       com3       com4       com5       com6
>>> com7       com8
>>> 0.05331536 0.03630438 0.07372825 0.06071274 0.05671961 0.05128404
>>> 0.10541586 0.08965742
>>>       com9      com10      com11      com12      com13      com14
>>>  com15      com16
>>> 0.09102682 0.04333067 0.04941515 0.05495308 0.03115535 0.06048519
>>> 0.06070379 0.08680368
>>>      com17      com18      com19      com20      com21      com22
>>>  com23      com24
>>> 0.07256118 0.05321952 0.08855815 0.10718949 0.10760039 0.07391960
>>> 0.09163325 0.11476244
>>>      com25      com26      com27      com28      com29      com30
>>>  com31      com32
>>> 0.10458183 0.08833300 0.07746703 0.07975863 0.08699710 0.07029682
>>> 0.04116800 0.02091466
>>>      com33      com34      com35      com36      com37      com38
>>>  com39      com40
>>> 0.03452371 0.03102533 0.07072961 0.04601163 0.05125527 0.08872861
>>> 0.03608639 0.11227991
>>>      com41      com42      com43      com44      com45      com46
>>>  com47      com48
>>> 0.07155343 0.10655043 0.09463142 0.04483107 0.05149290 0.06818611
>>> 0.05776898 0.08787335
>>>      com49      com50      com51      com52      com53      com54
>>>  com55      com56
>>> 0.06689262 0.06673575 0.07673498 0.08209786 0.06165892 0.07169030
>>> 0.07207671 0.05351944
>>>      com57      com58      com59      com60      com61      com62
>>>  com63      com64
>>> 0.10496706 0.07830439 0.11178032 0.05616672 0.04961674 0.11105321
>>> 0.03840657 0.03693797
>>>      com65      com66      com67      com68      com69      com70
>>>  com71      com72
>>> 0.05718178 0.07088485 0.03711119 0.08826702 0.02446860 0.08202483
>>> 0.05274964 0.07232899
>>>      com73      com74      com75      com76      com77      com78
>>>  com79      com80
>>> 0.06245748 0.05668243 0.06019524 0.07375344 0.07743079 0.06009721
>>> 0.05757830 0.05642231
>>>      com81      com82
>>> 0.03665132 0.06852237
>>>
>>> $CWM
>>>         trait1                        trait2   trait3              trait4
>>>         trait5
>>> com1  Demersal Marine, brackish, freshwater  3.361717 Invertebrate Feeder
>>>        Browser
>>> com2  Demersal Marine, brackish, freshwater  3.391770 Invertebrate Feeder
>>>        Browser
>>> com3  Demersal Marine, brackish, freshwater  3.389626 Invertebrate Feeder
>>>        Browser
>>> com4  Demersal Marine, brackish, freshwater  3.437043 Invertebrate Feeder
>>>        Browser
>>> com5  Demersal Marine, brackish, freshwater  3.450760 Invertebrate Feeder
>>>        Browser
>>> com6  Demersal Marine, brackish, freshwater  3.354952 Invertebrate Feeder
>>>        Browser
>>> com7  Demersal Marine, brackish, freshwater  3.389917 Invertebrate Feeder
>>>        Browser
>>> com8  Demersal Marine, brackish, freshwater  3.382973 Invertebrate Feeder
>>>        Browser
>>> com9  Demersal Marine, brackish, freshwater  3.371722 Invertebrate Feeder
>>>        Browser
>>> com10 Demersal Marine, brackish, freshwater  3.371057 Invertebrate Feeder
>>>        Browser
>>> com11 Demersal Marine, brackish, freshwater  3.389740 Invertebrate Feeder
>>>        Browser
>>> com12 Demersal Marine, brackish, freshwater  3.416626 Invertebrate Feeder
>>>        Browser
>>> com13 Demersal Marine, brackish, freshwater  3.348563 Invertebrate Feeder
>>>        Browser
>>> com14 Demersal Marine, brackish, freshwater  3.310051 Invertebrate Feeder
>>>        Browser
>>> com15 Demersal Marine, brackish, freshwater  3.274433 Invertebrate Feeder
>>>        Browser
>>> com16 Demersal Marine, brackish, freshwater  3.366033 Invertebrate Feeder
>>>        Browser
>>> com17  Pelagic Marine, brackish, freshwater  3.284144 Invertebrate Feeder
>>> Browser/Hunter
>>> com18 Demersal Marine, brackish, freshwater  3.352978 Invertebrate Feeder
>>>        Browser
>>> com19 Demersal Marine, brackish, freshwater  3.313528 Invertebrate Feeder
>>>        Browser
>>> com20 Demersal Marine, brackish, freshwater  3.368486 Invertebrate Feeder
>>>        Browser
>>> com21 Demersal Marine, brackish, freshwater  3.346555 Invertebrate Feeder
>>>        Browser
>>> com22 Demersal Marine, brackish, freshwater  3.348779 Invertebrate Feeder
>>>        Browser
>>> com23 Demersal Marine, brackish, freshwater  3.316949 Invertebrate Feeder
>>>        Browser
>>> com24 Demersal Marine, brackish, freshwater  3.332521 Invertebrate Feeder
>>>        Browser
>>> com25 Demersal Marine, brackish, freshwater  3.398814 Invertebrate Feeder
>>>        Browser
>>> com26 Demersal Marine, brackish, freshwater  3.281393 Invertebrate Feeder
>>>        Browser
>>> com27 Demersal Marine, brackish, freshwater  3.325194 Invertebrate Feeder
>>>        Browser
>>> com28 Demersal Marine, brackish, freshwater  3.356956 Invertebrate Feeder
>>>        Browser
>>> com29 Demersal Marine, brackish, freshwater  3.282245 Invertebrate Feeder
>>>        Browser
>>> com30 Demersal Marine, brackish, freshwater  3.263298 Invertebrate Feeder
>>>        Browser
>>> com31 Demersal Marine, brackish, freshwater  3.304036 Invertebrate Feeder
>>>        Browser
>>> com32 Demersal              Marine, brackish 3.230522 Invertebrate Feeder
>>>        Browser
>>> com33 Demersal Marine, brackish, freshwater  3.347002 Invertebrate Feeder
>>>        Browser
>>> com34 Demersal Marine, brackish, freshwater  3.430373 Invertebrate Feeder
>>>        Browser
>>> com35 Demersal Marine, brackish, freshwater  3.318061 Invertebrate Feeder
>>>        Browser
>>> com36 Demersal Marine, brackish, freshwater  3.334512 Invertebrate Feeder
>>>        Browser
>>> com37 Demersal Marine, brackish, freshwater  3.354938 Invertebrate Feeder
>>>        Browser
>>> com38 Demersal Marine, brackish, freshwater  3.282320 Invertebrate Feeder
>>>        Browser
>>> com39 Demersal Marine, brackish, freshwater  3.307719 Invertebrate Feeder
>>>        Browser
>>> com40 Demersal              Marine, brackish 3.343822 Invertebrate Feeder
>>>        Browser
>>> com41 Demersal Marine, brackish, freshwater  3.347152 Invertebrate Feeder
>>>        Browser
>>> com42 Demersal Marine, brackish, freshwater  3.389799 Invertebrate Feeder
>>>        Browser
>>> com43 Demersal Marine, brackish, freshwater  3.400693 Invertebrate Feeder
>>>        Browser
>>> com44 Demersal Marine, brackish, freshwater  3.421323 Invertebrate Feeder
>>>        Browser
>>> com45 Demersal Marine, brackish, freshwater  3.329006 Invertebrate Feeder
>>>        Browser
>>> com46 Demersal Marine, brackish, freshwater  3.316793 Invertebrate Feeder
>>>        Browser
>>> com47  Benthic Marine, brackish, freshwater  3.309663 Invertebrate Feeder
>>>        Browser
>>> com48 Demersal Marine, brackish, freshwater  3.372207 Invertebrate Feeder
>>>        Browser
>>> com49  Benthic Marine, brackish, freshwater  3.332736 Invertebrate Feeder
>>>        Browser
>>> com50  Benthic Marine, brackish, freshwater  3.311616 Invertebrate Feeder
>>>        Browser
>>> com51 Demersal Marine, brackish, freshwater  3.319775 Invertebrate Feeder
>>>        Browser
>>> com52 Demersal Marine, brackish, freshwater  3.277058 Invertebrate Feeder
>>>        Browser
>>> com53 Demersal Marine, brackish, freshwater  3.354429 Invertebrate Feeder
>>>        Browser
>>> com54 Demersal Marine, brackish, freshwater  3.339532 Invertebrate Feeder
>>>        Browser
>>> com55 Demersal Marine, brackish, freshwater  3.357153 Invertebrate Feeder
>>>        Browser
>>> com56  Benthic Marine, brackish, freshwater  3.279952 Invertebrate Feeder
>>>        Browser
>>> com57  Benthic              Marine, brackish 3.126602 Invertebrate Feeder
>>>        Browser
>>> com58  Benthic              Marine, brackish 3.217454 Invertebrate Feeder
>>>        Browser
>>> com59 Demersal              Marine, brackish 3.307770 Invertebrate Feeder
>>>        Browser
>>> com60 Demersal              Marine, brackish 3.252970 Invertebrate Feeder
>>>        Browser
>>> com61 Demersal Marine, brackish, freshwater  3.404601 Invertebrate Feeder
>>>        Browser
>>> com62  Pelagic Marine, brackish, freshwater  2.806229 Invertebrate Feeder
>>>        Browser
>>> com63 Demersal Marine, brackish, freshwater  3.287427 Invertebrate Feeder
>>>        Browser
>>> com64 Demersal Marine, brackish, freshwater  3.292238 Invertebrate Feeder
>>>        Browser
>>> com65 Demersal              Marine, brackish 3.265497 Invertebrate Feeder
>>>        Browser
>>> com66 Demersal Marine, brackish, freshwater  3.317879 Invertebrate Feeder
>>>        Browser
>>> com67 Demersal              Marine, brackish 3.258586 Invertebrate Feeder
>>>        Browser
>>> com68 Demersal Marine, brackish, freshwater  3.203772 Invertebrate Feeder
>>>        Browser
>>> com69 Demersal Marine, brackish, freshwater  3.289830 Invertebrate Feeder
>>>        Browser
>>> com70 Demersal              Marine, brackish 3.326195 Invertebrate Feeder
>>>        Browser
>>> com71  Benthic Marine, brackish, freshwater  3.325590 Invertebrate Feeder
>>>        Browser
>>> com72  Benthic Marine, brackish, freshwater  3.297994 Invertebrate Feeder
>>>        Browser
>>> com73 Demersal Marine, brackish, freshwater  3.331968 Invertebrate Feeder
>>>        Browser
>>> com74 Demersal Marine, brackish, freshwater  3.395514 Invertebrate Feeder
>>>        Browser
>>> com75 Demersal Marine, brackish, freshwater  3.323936 Invertebrate Feeder
>>>        Browser
>>> com76 Demersal Marine, brackish, freshwater  3.201015 Invertebrate Feeder
>>>        Browser
>>> com77 Demersal Marine, brackish, freshwater  3.280311 Invertebrate Feeder
>>>        Browser
>>> com78 Demersal Marine, brackish, freshwater  3.318771 Invertebrate Feeder
>>>        Browser
>>> com79 Demersal Marine, brackish, freshwater  3.318253 Invertebrate Feeder
>>>        Browser
>>> com80 Demersal Marine, brackish, freshwater  3.374939 Invertebrate Feeder
>>>        Browser
>>> com81 Demersal Marine, brackish, freshwater  3.440927 Invertebrate Feeder
>>>        Browser
>>> com82 Demersal Marine, brackish, freshwater  3.381153 Invertebrate Feeder
>>>        Browser
>>>          trait6
>>> com1  0.5 - 1.0
>>> com2  1.0 - 2.0
>>> com3  1.0 - 2.0
>>> com4  1.0 - 2.0
>>> com5  1.0 - 2.0
>>> com6  1.0 - 2.0
>>> com7  1.0 - 2.0
>>> com8  1.0 - 2.0
>>> com9  0.5 - 1.0
>>> com10 1.0 - 2.0
>>> com11 1.0 - 2.0
>>> com12 1.0 - 2.0
>>> com13 0.5 - 1.0
>>> com14 0.5 - 1.0
>>> com15 0.5 - 1.0
>>> com16 0.5 - 1.0
>>> com17 1.0 - 2.0
>>> com18 0.5 - 1.0
>>> com19 0.5 - 1.0
>>> com20 0.5 - 1.0
>>> com21 0.5 - 1.0
>>> com22 0.5 - 1.0
>>> com23 1.0 - 2.0
>>> com24 1.0 - 2.0
>>> com25 1.0 - 2.0
>>> com26 1.0 - 2.0
>>> com27 1.0 - 2.0
>>> com28 0.5 - 1.0
>>> com29 0.5 - 1.0
>>> com30 0.5 - 1.0
>>> com31 0.5 - 1.0
>>> com32 0.5 - 1.0
>>> com33 0.5 - 1.0
>>> com34 1.0 - 2.0
>>> com35 0.5 - 1.0
>>> com36 0.5 - 1.0
>>> com37 1.0 - 2.0
>>> com38 0.5 - 1.0
>>> com39 0.5 - 1.0
>>> com40 0.5 - 1.0
>>> com41 0.5 - 1.0
>>> com42 1.0 - 2.0
>>> com43 1.0 - 2.0
>>> com44 1.0 - 2.0
>>> com45     < 0.5
>>> com46     < 0.5
>>> com47     < 0.5
>>> com48     < 0.5
>>> com49     < 0.5
>>> com50     < 0.5
>>> com51     < 0.5
>>> com52 0.5 - 1.0
>>> com53 0.5 - 1.0
>>> com54     < 0.5
>>> com55     < 0.5
>>> com56     < 0.5
>>> com57     < 0.5
>>> com58     < 0.5
>>> com59 0.5 - 1.0
>>> com60 0.5 - 1.0
>>> com61 1.0 - 2.0
>>> com62 1.0 - 2.0
>>> com63 0.5 - 1.0
>>> com64 0.5 - 1.0
>>> com65 0.5 - 1.0
>>> com66 0.5 - 1.0
>>> com67 0.5 - 1.0
>>> com68 0.5 - 1.0
>>> com69 0.5 - 1.0
>>> com70 0.5 - 1.0
>>> com71     < 0.5
>>> com72     < 0.5
>>> com73     < 0.5
>>> com74 1.0 - 2.0
>>> com75 0.5 - 1.0
>>> com76 0.5 - 1.0
>>> com77 1.0 - 2.0
>>> com78 0.5 - 1.0
>>> com79 0.5 - 1.0
>>> com80 1.0 - 2.0
>>> com81 1.0 - 2.0
>>> com82 1.0 - 2.0
>>>
>>> 2016-02-22 13:58 GMT+00:00 stephen sefick <ssefick at gmail.com>:
>>>
>>>> If memory serves me, dbFD returns a lot of output. What do you want to
>>>> plot? Also, please provide reproducible examples, so that we can help you
>>>> solve your R related queries.
>>>> kindest regards,
>>>>
>>>> Stephen
>>>>
>>>> On Mon, Feb 22, 2016 at 7:00 AM, Fabio Monteiro <
>>>> fabio.monteiro1992 at gmail.com> wrote:
>>>>
>>>>> Hi
>>>>>
>>>>> thank you for your quick answer
>>>>>
>>>>> I finally managed to insert everything correctly and dbFD is caltulated.
>>>>>
>>>>> I'm now trying to plot the results.
>>>>>
>>>>> My objects are matrices.
>>>>>
>>>>> x is a functional trait and species matrice. a is the species and
>>>>> samples
>>>>>
>>>>> Thank you
>>>>>
>>>>> 2016-02-22 12:19 GMT+00:00 PIKAL Petr <petr.pikal at precheza.cz>:
>>>>>
>>>>> > Hi
>>>>> >
>>>>> > comments inline
>>>>> >
>>>>> > > -----Original Message-----
>>>>> > > From: R-help [mailto:r-help-bounces at r-project.org] On Behalf Of
>>>>> Fabio
>>>>> > > Monteiro
>>>>> > > Sent: Monday, February 22, 2016 11:51 AM
>>>>> > > To: r-help at r-project.org
>>>>> > > Subject: [R] FD package
>>>>> > >
>>>>> > > Hi.
>>>>> > >
>>>>> > > First i would like to say that i'm really new in R. I recently
>>>>> started
>>>>> > > working with R and i'm using the FD package.
>>>>> > >
>>>>> > > I'm having some errors that doesn't make any sense.
>>>>> > >
>>>>> > > I have 2 matrix, one is the species with functional traits and the
>>>>> > > second one is the species and abundances.
>>>>> >
>>>>> > Your objects are matrices or data frames? From docs dbFD expects
>>>>> various
>>>>> > inputs byt they have to be properly formatted.
>>>>> >
>>>>> > >
>>>>> > > When I try to run the dbFD to calculate the functional diversity,
>>>>> the
>>>>> > > error is the number of species is different in x and a.
>>>>> > >
>>>>> > > I checked a lot of times and the number of species is the same and
>>>>> > > there are no mistakes in their names like spaces or caps.
>>>>> >
>>>>> > How did you checked?
>>>>> >
>>>>> > dim(trait) and  dim(abund)
>>>>> >
>>>>> > shall give you the same number of rows in traits as columns in abund.
>>>>> >
>>>>> > If trait is vector, you need to use length instead of dim.
>>>>> >
>>>>> > >
>>>>> > > Can you help me?
>>>>> >
>>>>> > Without better description of your objects and code you used you
>>>>> hardly
>>>>> > get any answer. You can start by using examples from help page, which
>>>>> shall
>>>>> > work and see how your data differ from those examples.
>>>>> >
>>>>> > Cheers
>>>>> > Petr
>>>>> >
>>>>> >
>>>>> > >
>>>>> > > F?bio Monteiro
>>>>> > >
>>>>> > >       [[alternative HTML version deleted]]
>>>>> > >
>>>>> > > ______________________________________________
>>>>> > > R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see
>>>>> > > https://stat.ethz.ch/mailman/listinfo/r-help
>>>>> > > PLEASE do read the posting guide http://www.R-project.org/posting-
>>>>> > > guide.html
>>>>> > > and provide commented, minimal, self-contained, reproducible code.
>>>>> >
>>>>> > ________________________________
>>>>> > Tento e-mail a jak?koliv k n?mu p?ipojen? dokumenty jsou d?v?rn? a
>>>>> jsou
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>>>>> > Nejste-li zam??len?m adres?tem tohoto emailu, nejste opr?vn?ni tento
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>>>>> modifikacemi
>>>>> > ?i zpo?d?n?m p?enosu e-mailu.
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>>>>> > - a obsahuje-li nab?dku, je adres?t opr?vn?n nab?dku bezodkladn?
>>>>> p?ijmout;
>>>>> > Odes?latel tohoto e-mailu (nab?dky) vylu?uje p?ijet? nab?dky ze strany
>>>>> > p??jemce s dodatkem ?i odchylkou.
>>>>> > - trv? odes?latel na tom, ?e p??slu?n? smlouva je uzav?ena teprve
>>>>> > v?slovn?m dosa?en?m shody na v?ech jej?ch n?le?itostech.
>>>>> > - odes?latel tohoto emailu informuje, ?e nen? opr?vn?n uzav?rat za
>>>>> > spole?nost ??dn? smlouvy s v?jimkou p??pad?, kdy k tomu byl p?semn?
>>>>> zmocn?n
>>>>> > nebo p?semn? pov??en a takov? pov??en? nebo pln? moc byly adres?tovi
>>>>> tohoto
>>>>> > emailu p??padn? osob?, kterou adres?t zastupuje, p?edlo?eny nebo
>>>>> jejich
>>>>> > existence je adres?tovi ?i osob? j?m zastoupen? zn?m?.
>>>>> >
>>>>> > This e-mail and any documents attached to it may be confidential and
>>>>> are
>>>>> > intended only for its intended recipients.
>>>>> > If you received this e-mail by mistake, please immediately inform its
>>>>> > sender. Delete the contents of this e-mail with all attachments and
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>>>>> > copies from your system.
>>>>> > If you are not the intended recipient of this e-mail, you are not
>>>>> > authorized to use, disseminate, copy or disclose this e-mail in any
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>>>>> > The sender of this e-mail shall not be liable for any possible damage
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>>>>> > In case that this e-mail forms part of business dealings:
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>>>>> > - if the e-mail contains an offer, the recipient is entitled to
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>>>>> > - the sender insists on that the respective contract is concluded only
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>>>>>
>>>>>         [[alternative HTML version deleted]]
>>>>>
>>>>> ______________________________________________
>>>>> R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see
>>>>> https://stat.ethz.ch/mailman/listinfo/r-help
>>>>> PLEASE do read the posting guide
>>>>> http://www.R-project.org/posting-guide.html
>>>>> and provide commented, minimal, self-contained, reproducible code.
>>>>
>>>>
>>>>
>>>>
>>>> --
>>>> Stephen Sefick
>>>> **************************************************
>>>> Auburn University
>>>> Biological Sciences
>>>> 331 Funchess Hall
>>>> Auburn, Alabama
>>>> 36849
>>>> **************************************************
>>>> sas0025 at auburn.edu
>>>> http://www.auburn.edu/~sas0025
>>>> **************************************************
>>>>
>>>> Let's not spend our time and resources thinking about things that are so
>>>> little or so large that all they really do for us is puff us up and make us
>>>> feel like gods.  We are mammals, and have not exhausted the annoying little
>>>> problems of being mammals.
>>>>
>>>>                                 -K. Mullis
>>>>
>>>> "A big computer, a complex algorithm and a long time does not equal
>>>> science."
>>>>
>>>>                               -Robert Gentleman
>>>>
>>>>
>>>
>>
>>
>> --
>> Stephen Sefick
>> **************************************************
>> Auburn University
>> Biological Sciences
>> 331 Funchess Hall
>> Auburn, Alabama
>> 36849
>> **************************************************
>> sas0025 at auburn.edu
>> http://www.auburn.edu/~sas0025
>> **************************************************
>>
>> Let's not spend our time and resources thinking about things that are so
>> little or so large that all they really do for us is puff us up and make us
>> feel like gods.  We are mammals, and have not exhausted the annoying little
>> problems of being mammals.
>>
>>                                 -K. Mullis
>>
>> "A big computer, a complex algorithm and a long time does not equal
>> science."
>>
>>                               -Robert Gentleman
>>
>>
>
> 	[[alternative HTML version deleted]]
>
> ______________________________________________
> R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.

---------------------------------------------------------------------------
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