[R] FD package
Jeff Newmiller
jdnewmil at dcn.davis.ca.us
Mon Feb 22 20:54:30 CET 2016
"data" is the name of a function in base R. It is not a good idea to use
that as the name of an actual data object (to which the "$" operator is
being applied here). It is not clear from what you have provided what
variable names you are working with... you are not communicating yet using
reproducible examples, so you are depending on our psychic powers to fill
in the gaps, which is not likely to work reliably. I suspect that Stephen
used the generic term "data" since he did not know what variable name you
were actually using.
http://stackoverflow.com/questions/5963269/how-to-make-a-great-r-reproducible-example
On Mon, 22 Feb 2016, Fabio Monteiro wrote:
>> hist(data$FRic)
> Error in data$FRic : object of type 'closure' is not subsettable
>
> 2016-02-22 14:10 GMT+00:00 stephen sefick <ssefick at gmail.com>:
>
>> Please see ?dput. What you provided is not a minimal, reproducible example
>> (i.e., there is no R code).
>>
>> What kind of plot are you trying to plot? hist(data$FRic) will plot your
>> data. I guess we need more information to be helpful.
>>
>>
>> On Mon, Feb 22, 2016 at 8:03 AM, Fabio Monteiro <
>> fabio.monteiro1992 at gmail.com> wrote:
>>
>>> This is the output.
>>>
>>> I want to plot, for example FRic
>>>
>>> $nbsp
>>> com1 com2 com3 com4 com5 com6 com7 com8 com9 com10 com11 com12
>>> com13 com14 com15 com16
>>> 17 21 18 12 15 20 16 12 18 15 18 16
>>> 10 11 17 20
>>> com17 com18 com19 com20 com21 com22 com23 com24 com25 com26 com27 com28
>>> com29 com30 com31 com32
>>> 9 13 11 10 11 15 12 16 18 18 11 19
>>> 12 13 13 12
>>> com33 com34 com35 com36 com37 com38 com39 com40 com41 com42 com43 com44
>>> com45 com46 com47 com48
>>> 15 11 15 8 7 12 10 9 12 15 13 13
>>> 15 13 10 16
>>> com49 com50 com51 com52 com53 com54 com55 com56 com57 com58 com59 com60
>>> com61 com62 com63 com64
>>> 14 12 14 13 14 13 15 13 11 12 16 13
>>> 9 8 11 15
>>> com65 com66 com67 com68 com69 com70 com71 com72 com73 com74 com75 com76
>>> com77 com78 com79 com80
>>> 13 18 13 15 10 11 12 11 14 8 10 12
>>> 11 12 14 13
>>> com81 com82
>>> 9 12
>>>
>>> $sing.sp
>>> com1 com2 com3 com4 com5 com6 com7 com8 com9 com10 com11 com12
>>> com13 com14 com15 com16
>>> 17 21 18 12 15 20 16 12 18 15 18 16
>>> 10 11 17 20
>>> com17 com18 com19 com20 com21 com22 com23 com24 com25 com26 com27 com28
>>> com29 com30 com31 com32
>>> 9 13 11 10 11 15 12 16 18 18 11 19
>>> 12 13 13 12
>>> com33 com34 com35 com36 com37 com38 com39 com40 com41 com42 com43 com44
>>> com45 com46 com47 com48
>>> 14 11 15 8 7 12 10 9 12 15 13 13
>>> 15 13 10 16
>>> com49 com50 com51 com52 com53 com54 com55 com56 com57 com58 com59 com60
>>> com61 com62 com63 com64
>>> 14 12 13 13 14 13 15 13 11 12 16 13
>>> 9 8 11 15
>>> com65 com66 com67 com68 com69 com70 com71 com72 com73 com74 com75 com76
>>> com77 com78 com79 com80
>>> 13 17 13 15 10 11 12 11 14 8 10 12
>>> 11 12 14 13
>>> com81 com82
>>> 9 12
>>>
>>> $FRic
>>> com1 com2 com3 com4 com5
>>> com6 com7
>>> 3.669752e-04 6.898164e-04 6.893918e-04 3.935451e-05 1.436140e-04
>>> 1.012949e-03 2.934536e-04
>>> com8 com9 com10 com11 com12
>>> com13 com14
>>> 1.001556e-04 6.425547e-04 1.740235e-04 5.561802e-04 2.964362e-04
>>> 1.480860e-05 1.060512e-04
>>> com15 com16 com17 com18 com19
>>> com20 com21
>>> 4.121157e-04 5.346433e-04 1.108007e-06 5.726895e-05 8.593435e-06
>>> 1.452446e-05 1.855957e-05
>>> com22 com23 com24 com25 com26
>>> com27 com28
>>> 2.128971e-04 8.438329e-05 3.216279e-04 2.529525e-04 4.980317e-04
>>> 3.111325e-05 6.290088e-04
>>> com29 com30 com31 com32 com33
>>> com34 com35
>>> 3.559802e-05 5.907167e-05 8.906878e-05 2.510168e-05 1.929088e-04
>>> 1.234508e-04 2.784301e-04
>>> com36 com37 com38 com39 com40
>>> com41 com42
>>> 1.480560e-08 1.411752e-06 5.576549e-05 2.445569e-05 6.167242e-06
>>> 1.210002e-04 1.666034e-04
>>> com43 com44 com45 com46 com47
>>> com48 com49
>>> 1.203484e-04 7.347513e-05 8.991003e-05 8.691148e-05 6.718789e-05
>>> 1.357136e-04 1.821851e-04
>>> com50 com51 com52 com53 com54
>>> com55 com56
>>> 4.832203e-05 8.391627e-05 2.173971e-04 1.355160e-04 1.304425e-04
>>> 1.787888e-04 1.759204e-05
>>> com57 com58 com59 com60 com61
>>> com62 com63
>>> 9.307474e-05 1.185857e-04 2.776166e-04 1.277143e-04 5.905299e-06
>>> 9.606009e-08 1.019480e-04
>>> com64 com65 com66 com67 com68
>>> com69 com70
>>> 2.395355e-04 2.307081e-04 4.019309e-04 6.874506e-05 1.417622e-04
>>> 5.675463e-06 9.878848e-05
>>> com71 com72 com73 com74 com75
>>> com76 com77
>>> 6.907251e-05 8.938528e-05 2.493585e-04 1.214151e-09 2.419942e-05
>>> 1.183863e-04 7.457464e-05
>>> com78 com79 com80 com81 com82
>>> 6.284563e-05 1.741100e-04 2.128749e-04 2.920847e-06 9.368270e-05
>>>
>>> $qual.FRic
>>> [1] 0.7035642
>>>
>>> $FEve
>>> com1 com2 com3 com4 com5 com6 com7
>>> com8 com9
>>> 0.2388515 0.3996566 0.3350494 0.2943431 0.3576785 0.3846561 0.4319967
>>> 0.5857688 0.4271764
>>> com10 com11 com12 com13 com14 com15 com16
>>> com17 com18
>>> 0.3288544 0.4625139 0.4810921 0.3041395 0.5820621 0.6313595 0.5406627
>>> 0.2707035 0.4530424
>>> com19 com20 com21 com22 com23 com24 com25
>>> com26 com27
>>> 0.3015171 0.5790744 0.7253301 0.5441404 0.4481694 0.6187607 0.5445650
>>> 0.4955940 0.5116752
>>> com28 com29 com30 com31 com32 com33 com34
>>> com35 com36
>>> 0.5221560 0.5670513 0.4293040 0.4812907 0.4915317 0.3878949 0.4287726
>>> 0.2893205 0.5835605
>>> com37 com38 com39 com40 com41 com42 com43
>>> com44 com45
>>> 0.7896749 0.5482274 0.4015703 0.5990018 0.5431955 0.6251919 0.6023954
>>> 0.4962892 0.3749658
>>> com46 com47 com48 com49 com50 com51 com52
>>> com53 com54
>>> 0.4290664 0.4932756 0.5870607 0.3415984 0.3242199 0.4296702 0.4971491
>>> 0.3272834 0.4865427
>>> com55 com56 com57 com58 com59 com60 com61
>>> com62 com63
>>> 0.3428716 0.4653631 0.5479140 0.5698272 0.4777804 0.4525375 0.5916255
>>> 0.4652363 0.4111973
>>> com64 com65 com66 com67 com68 com69 com70
>>> com71 com72
>>> 0.3987632 0.3856989 0.3064660 0.4717288 0.3534531 0.4285679 0.6087836
>>> 0.3607790 0.5494437
>>> com73 com74 com75 com76 com77 com78 com79
>>> com80 com81
>>> 0.4214327 0.4360703 0.3808632 0.2833824 0.2876808 0.3380949 0.3421757
>>> 0.2249389 0.6562824
>>> com82
>>> 0.6041267
>>>
>>> $FDiv
>>> com1 com2 com3 com4 com5 com6 com7
>>> com8 com9
>>> 0.7423817 0.7458169 0.8679783 0.8226750 0.8373889 0.7877725 0.8070008
>>> 0.7379254 0.8131881
>>> com10 com11 com12 com13 com14 com15 com16
>>> com17 com18
>>> 0.7050804 0.6976598 0.7512530 0.6806472 0.6994011 0.7276620 0.7870732
>>> 0.8793599 0.7562019
>>> com19 com20 com21 com22 com23 com24 com25
>>> com26 com27
>>> 0.8983302 0.7681038 0.8163501 0.8198178 0.8489976 0.8922742 0.8442970
>>> 0.8269863 0.7891795
>>> com28 com29 com30 com31 com32 com33 com34
>>> com35 com36
>>> 0.7569559 0.8674167 0.7436638 0.7317634 0.9541561 0.7466859 0.7087626
>>> 0.8006321 0.8511148
>>> com37 com38 com39 com40 com41 com42 com43
>>> com44 com45
>>> 0.7729260 0.7509163 0.6905947 0.8466404 0.7677596 0.8791198 0.8211045
>>> 0.7259760 0.7992553
>>> com46 com47 com48 com49 com50 com51 com52
>>> com53 com54
>>> 0.7573869 0.8788377 0.9036087 0.8287276 0.7762280 0.8064715 0.7775368
>>> 0.7828276 0.8151245
>>> com55 com56 com57 com58 com59 com60 com61
>>> com62 com63
>>> 0.7503195 0.9213640 0.9141396 0.9150055 0.8348691 0.7271261 0.7875414
>>> 0.8338675 0.7070272
>>> com64 com65 com66 com67 com68 com69 com70
>>> com71 com72
>>> 0.7189990 0.7043998 0.7768710 0.7264939 0.8140790 0.7532290 0.7309884
>>> 0.9190267 0.8540992
>>> com73 com74 com75 com76 com77 com78 com79
>>> com80 com81
>>> 0.7531779 0.8520790 0.7649957 0.7319195 0.7578687 0.7915857 0.7600834
>>> 0.7303097 0.7693079
>>> com82
>>> 0.7487281
>>>
>>> $FDis
>>> com1 com2 com3 com4 com5 com6
>>> com7 com8
>>> 0.19178600 0.15352983 0.23419296 0.20315128 0.18604639 0.14348855
>>> 0.28989249 0.25752544
>>> com9 com10 com11 com12 com13 com14
>>> com15 com16
>>> 0.26174957 0.15962395 0.17907612 0.19642851 0.12827329 0.20114316
>>> 0.18128942 0.25731184
>>> com17 com18 com19 com20 com21 com22
>>> com23 com24
>>> 0.25855225 0.19576353 0.26366092 0.27728602 0.29546846 0.20720052
>>> 0.27212077 0.30880887
>>> com25 com26 com27 com28 com29 com30
>>> com31 com32
>>> 0.29440458 0.25396646 0.25647806 0.23422171 0.25464177 0.24311894
>>> 0.16182038 0.09958014
>>> com33 com34 com35 com36 com37 com38
>>> com39 com40
>>> 0.13095167 0.12983413 0.24224903 0.18239337 0.19817113 0.26320996
>>> 0.11766508 0.30940641
>>> com41 com42 com43 com44 com45 com46
>>> com47 com48
>>> 0.23583814 0.30624876 0.27750572 0.16747032 0.21445188 0.24327116
>>> 0.20589103 0.27339261
>>> com49 com50 com51 com52 com53 com54
>>> com55 com56
>>> 0.23614656 0.23678552 0.25641929 0.26260242 0.22516659 0.25243952
>>> 0.23674896 0.18732040
>>> com57 com58 com59 com60 com61 com62
>>> com63 com64
>>> 0.27202483 0.22947018 0.31342777 0.17997456 0.18461335 0.32429534
>>> 0.14840674 0.13731830
>>> com65 com66 com67 com68 com69 com70
>>> com71 com72
>>> 0.20437128 0.23298402 0.14830718 0.27194825 0.09289396 0.23196338
>>> 0.17920946 0.25265696
>>> com73 com74 com75 com76 com77 com78
>>> com79 com80
>>> 0.23525249 0.22171523 0.21972879 0.23523622 0.25336830 0.22477734
>>> 0.20430806 0.20674064
>>> com81 com82
>>> 0.14270928 0.22673005
>>>
>>> $RaoQ
>>> com1 com2 com3 com4 com5 com6
>>> com7 com8
>>> 0.05331536 0.03630438 0.07372825 0.06071274 0.05671961 0.05128404
>>> 0.10541586 0.08965742
>>> com9 com10 com11 com12 com13 com14
>>> com15 com16
>>> 0.09102682 0.04333067 0.04941515 0.05495308 0.03115535 0.06048519
>>> 0.06070379 0.08680368
>>> com17 com18 com19 com20 com21 com22
>>> com23 com24
>>> 0.07256118 0.05321952 0.08855815 0.10718949 0.10760039 0.07391960
>>> 0.09163325 0.11476244
>>> com25 com26 com27 com28 com29 com30
>>> com31 com32
>>> 0.10458183 0.08833300 0.07746703 0.07975863 0.08699710 0.07029682
>>> 0.04116800 0.02091466
>>> com33 com34 com35 com36 com37 com38
>>> com39 com40
>>> 0.03452371 0.03102533 0.07072961 0.04601163 0.05125527 0.08872861
>>> 0.03608639 0.11227991
>>> com41 com42 com43 com44 com45 com46
>>> com47 com48
>>> 0.07155343 0.10655043 0.09463142 0.04483107 0.05149290 0.06818611
>>> 0.05776898 0.08787335
>>> com49 com50 com51 com52 com53 com54
>>> com55 com56
>>> 0.06689262 0.06673575 0.07673498 0.08209786 0.06165892 0.07169030
>>> 0.07207671 0.05351944
>>> com57 com58 com59 com60 com61 com62
>>> com63 com64
>>> 0.10496706 0.07830439 0.11178032 0.05616672 0.04961674 0.11105321
>>> 0.03840657 0.03693797
>>> com65 com66 com67 com68 com69 com70
>>> com71 com72
>>> 0.05718178 0.07088485 0.03711119 0.08826702 0.02446860 0.08202483
>>> 0.05274964 0.07232899
>>> com73 com74 com75 com76 com77 com78
>>> com79 com80
>>> 0.06245748 0.05668243 0.06019524 0.07375344 0.07743079 0.06009721
>>> 0.05757830 0.05642231
>>> com81 com82
>>> 0.03665132 0.06852237
>>>
>>> $CWM
>>> trait1 trait2 trait3 trait4
>>> trait5
>>> com1 Demersal Marine, brackish, freshwater 3.361717 Invertebrate Feeder
>>> Browser
>>> com2 Demersal Marine, brackish, freshwater 3.391770 Invertebrate Feeder
>>> Browser
>>> com3 Demersal Marine, brackish, freshwater 3.389626 Invertebrate Feeder
>>> Browser
>>> com4 Demersal Marine, brackish, freshwater 3.437043 Invertebrate Feeder
>>> Browser
>>> com5 Demersal Marine, brackish, freshwater 3.450760 Invertebrate Feeder
>>> Browser
>>> com6 Demersal Marine, brackish, freshwater 3.354952 Invertebrate Feeder
>>> Browser
>>> com7 Demersal Marine, brackish, freshwater 3.389917 Invertebrate Feeder
>>> Browser
>>> com8 Demersal Marine, brackish, freshwater 3.382973 Invertebrate Feeder
>>> Browser
>>> com9 Demersal Marine, brackish, freshwater 3.371722 Invertebrate Feeder
>>> Browser
>>> com10 Demersal Marine, brackish, freshwater 3.371057 Invertebrate Feeder
>>> Browser
>>> com11 Demersal Marine, brackish, freshwater 3.389740 Invertebrate Feeder
>>> Browser
>>> com12 Demersal Marine, brackish, freshwater 3.416626 Invertebrate Feeder
>>> Browser
>>> com13 Demersal Marine, brackish, freshwater 3.348563 Invertebrate Feeder
>>> Browser
>>> com14 Demersal Marine, brackish, freshwater 3.310051 Invertebrate Feeder
>>> Browser
>>> com15 Demersal Marine, brackish, freshwater 3.274433 Invertebrate Feeder
>>> Browser
>>> com16 Demersal Marine, brackish, freshwater 3.366033 Invertebrate Feeder
>>> Browser
>>> com17 Pelagic Marine, brackish, freshwater 3.284144 Invertebrate Feeder
>>> Browser/Hunter
>>> com18 Demersal Marine, brackish, freshwater 3.352978 Invertebrate Feeder
>>> Browser
>>> com19 Demersal Marine, brackish, freshwater 3.313528 Invertebrate Feeder
>>> Browser
>>> com20 Demersal Marine, brackish, freshwater 3.368486 Invertebrate Feeder
>>> Browser
>>> com21 Demersal Marine, brackish, freshwater 3.346555 Invertebrate Feeder
>>> Browser
>>> com22 Demersal Marine, brackish, freshwater 3.348779 Invertebrate Feeder
>>> Browser
>>> com23 Demersal Marine, brackish, freshwater 3.316949 Invertebrate Feeder
>>> Browser
>>> com24 Demersal Marine, brackish, freshwater 3.332521 Invertebrate Feeder
>>> Browser
>>> com25 Demersal Marine, brackish, freshwater 3.398814 Invertebrate Feeder
>>> Browser
>>> com26 Demersal Marine, brackish, freshwater 3.281393 Invertebrate Feeder
>>> Browser
>>> com27 Demersal Marine, brackish, freshwater 3.325194 Invertebrate Feeder
>>> Browser
>>> com28 Demersal Marine, brackish, freshwater 3.356956 Invertebrate Feeder
>>> Browser
>>> com29 Demersal Marine, brackish, freshwater 3.282245 Invertebrate Feeder
>>> Browser
>>> com30 Demersal Marine, brackish, freshwater 3.263298 Invertebrate Feeder
>>> Browser
>>> com31 Demersal Marine, brackish, freshwater 3.304036 Invertebrate Feeder
>>> Browser
>>> com32 Demersal Marine, brackish 3.230522 Invertebrate Feeder
>>> Browser
>>> com33 Demersal Marine, brackish, freshwater 3.347002 Invertebrate Feeder
>>> Browser
>>> com34 Demersal Marine, brackish, freshwater 3.430373 Invertebrate Feeder
>>> Browser
>>> com35 Demersal Marine, brackish, freshwater 3.318061 Invertebrate Feeder
>>> Browser
>>> com36 Demersal Marine, brackish, freshwater 3.334512 Invertebrate Feeder
>>> Browser
>>> com37 Demersal Marine, brackish, freshwater 3.354938 Invertebrate Feeder
>>> Browser
>>> com38 Demersal Marine, brackish, freshwater 3.282320 Invertebrate Feeder
>>> Browser
>>> com39 Demersal Marine, brackish, freshwater 3.307719 Invertebrate Feeder
>>> Browser
>>> com40 Demersal Marine, brackish 3.343822 Invertebrate Feeder
>>> Browser
>>> com41 Demersal Marine, brackish, freshwater 3.347152 Invertebrate Feeder
>>> Browser
>>> com42 Demersal Marine, brackish, freshwater 3.389799 Invertebrate Feeder
>>> Browser
>>> com43 Demersal Marine, brackish, freshwater 3.400693 Invertebrate Feeder
>>> Browser
>>> com44 Demersal Marine, brackish, freshwater 3.421323 Invertebrate Feeder
>>> Browser
>>> com45 Demersal Marine, brackish, freshwater 3.329006 Invertebrate Feeder
>>> Browser
>>> com46 Demersal Marine, brackish, freshwater 3.316793 Invertebrate Feeder
>>> Browser
>>> com47 Benthic Marine, brackish, freshwater 3.309663 Invertebrate Feeder
>>> Browser
>>> com48 Demersal Marine, brackish, freshwater 3.372207 Invertebrate Feeder
>>> Browser
>>> com49 Benthic Marine, brackish, freshwater 3.332736 Invertebrate Feeder
>>> Browser
>>> com50 Benthic Marine, brackish, freshwater 3.311616 Invertebrate Feeder
>>> Browser
>>> com51 Demersal Marine, brackish, freshwater 3.319775 Invertebrate Feeder
>>> Browser
>>> com52 Demersal Marine, brackish, freshwater 3.277058 Invertebrate Feeder
>>> Browser
>>> com53 Demersal Marine, brackish, freshwater 3.354429 Invertebrate Feeder
>>> Browser
>>> com54 Demersal Marine, brackish, freshwater 3.339532 Invertebrate Feeder
>>> Browser
>>> com55 Demersal Marine, brackish, freshwater 3.357153 Invertebrate Feeder
>>> Browser
>>> com56 Benthic Marine, brackish, freshwater 3.279952 Invertebrate Feeder
>>> Browser
>>> com57 Benthic Marine, brackish 3.126602 Invertebrate Feeder
>>> Browser
>>> com58 Benthic Marine, brackish 3.217454 Invertebrate Feeder
>>> Browser
>>> com59 Demersal Marine, brackish 3.307770 Invertebrate Feeder
>>> Browser
>>> com60 Demersal Marine, brackish 3.252970 Invertebrate Feeder
>>> Browser
>>> com61 Demersal Marine, brackish, freshwater 3.404601 Invertebrate Feeder
>>> Browser
>>> com62 Pelagic Marine, brackish, freshwater 2.806229 Invertebrate Feeder
>>> Browser
>>> com63 Demersal Marine, brackish, freshwater 3.287427 Invertebrate Feeder
>>> Browser
>>> com64 Demersal Marine, brackish, freshwater 3.292238 Invertebrate Feeder
>>> Browser
>>> com65 Demersal Marine, brackish 3.265497 Invertebrate Feeder
>>> Browser
>>> com66 Demersal Marine, brackish, freshwater 3.317879 Invertebrate Feeder
>>> Browser
>>> com67 Demersal Marine, brackish 3.258586 Invertebrate Feeder
>>> Browser
>>> com68 Demersal Marine, brackish, freshwater 3.203772 Invertebrate Feeder
>>> Browser
>>> com69 Demersal Marine, brackish, freshwater 3.289830 Invertebrate Feeder
>>> Browser
>>> com70 Demersal Marine, brackish 3.326195 Invertebrate Feeder
>>> Browser
>>> com71 Benthic Marine, brackish, freshwater 3.325590 Invertebrate Feeder
>>> Browser
>>> com72 Benthic Marine, brackish, freshwater 3.297994 Invertebrate Feeder
>>> Browser
>>> com73 Demersal Marine, brackish, freshwater 3.331968 Invertebrate Feeder
>>> Browser
>>> com74 Demersal Marine, brackish, freshwater 3.395514 Invertebrate Feeder
>>> Browser
>>> com75 Demersal Marine, brackish, freshwater 3.323936 Invertebrate Feeder
>>> Browser
>>> com76 Demersal Marine, brackish, freshwater 3.201015 Invertebrate Feeder
>>> Browser
>>> com77 Demersal Marine, brackish, freshwater 3.280311 Invertebrate Feeder
>>> Browser
>>> com78 Demersal Marine, brackish, freshwater 3.318771 Invertebrate Feeder
>>> Browser
>>> com79 Demersal Marine, brackish, freshwater 3.318253 Invertebrate Feeder
>>> Browser
>>> com80 Demersal Marine, brackish, freshwater 3.374939 Invertebrate Feeder
>>> Browser
>>> com81 Demersal Marine, brackish, freshwater 3.440927 Invertebrate Feeder
>>> Browser
>>> com82 Demersal Marine, brackish, freshwater 3.381153 Invertebrate Feeder
>>> Browser
>>> trait6
>>> com1 0.5 - 1.0
>>> com2 1.0 - 2.0
>>> com3 1.0 - 2.0
>>> com4 1.0 - 2.0
>>> com5 1.0 - 2.0
>>> com6 1.0 - 2.0
>>> com7 1.0 - 2.0
>>> com8 1.0 - 2.0
>>> com9 0.5 - 1.0
>>> com10 1.0 - 2.0
>>> com11 1.0 - 2.0
>>> com12 1.0 - 2.0
>>> com13 0.5 - 1.0
>>> com14 0.5 - 1.0
>>> com15 0.5 - 1.0
>>> com16 0.5 - 1.0
>>> com17 1.0 - 2.0
>>> com18 0.5 - 1.0
>>> com19 0.5 - 1.0
>>> com20 0.5 - 1.0
>>> com21 0.5 - 1.0
>>> com22 0.5 - 1.0
>>> com23 1.0 - 2.0
>>> com24 1.0 - 2.0
>>> com25 1.0 - 2.0
>>> com26 1.0 - 2.0
>>> com27 1.0 - 2.0
>>> com28 0.5 - 1.0
>>> com29 0.5 - 1.0
>>> com30 0.5 - 1.0
>>> com31 0.5 - 1.0
>>> com32 0.5 - 1.0
>>> com33 0.5 - 1.0
>>> com34 1.0 - 2.0
>>> com35 0.5 - 1.0
>>> com36 0.5 - 1.0
>>> com37 1.0 - 2.0
>>> com38 0.5 - 1.0
>>> com39 0.5 - 1.0
>>> com40 0.5 - 1.0
>>> com41 0.5 - 1.0
>>> com42 1.0 - 2.0
>>> com43 1.0 - 2.0
>>> com44 1.0 - 2.0
>>> com45 < 0.5
>>> com46 < 0.5
>>> com47 < 0.5
>>> com48 < 0.5
>>> com49 < 0.5
>>> com50 < 0.5
>>> com51 < 0.5
>>> com52 0.5 - 1.0
>>> com53 0.5 - 1.0
>>> com54 < 0.5
>>> com55 < 0.5
>>> com56 < 0.5
>>> com57 < 0.5
>>> com58 < 0.5
>>> com59 0.5 - 1.0
>>> com60 0.5 - 1.0
>>> com61 1.0 - 2.0
>>> com62 1.0 - 2.0
>>> com63 0.5 - 1.0
>>> com64 0.5 - 1.0
>>> com65 0.5 - 1.0
>>> com66 0.5 - 1.0
>>> com67 0.5 - 1.0
>>> com68 0.5 - 1.0
>>> com69 0.5 - 1.0
>>> com70 0.5 - 1.0
>>> com71 < 0.5
>>> com72 < 0.5
>>> com73 < 0.5
>>> com74 1.0 - 2.0
>>> com75 0.5 - 1.0
>>> com76 0.5 - 1.0
>>> com77 1.0 - 2.0
>>> com78 0.5 - 1.0
>>> com79 0.5 - 1.0
>>> com80 1.0 - 2.0
>>> com81 1.0 - 2.0
>>> com82 1.0 - 2.0
>>>
>>> 2016-02-22 13:58 GMT+00:00 stephen sefick <ssefick at gmail.com>:
>>>
>>>> If memory serves me, dbFD returns a lot of output. What do you want to
>>>> plot? Also, please provide reproducible examples, so that we can help you
>>>> solve your R related queries.
>>>> kindest regards,
>>>>
>>>> Stephen
>>>>
>>>> On Mon, Feb 22, 2016 at 7:00 AM, Fabio Monteiro <
>>>> fabio.monteiro1992 at gmail.com> wrote:
>>>>
>>>>> Hi
>>>>>
>>>>> thank you for your quick answer
>>>>>
>>>>> I finally managed to insert everything correctly and dbFD is caltulated.
>>>>>
>>>>> I'm now trying to plot the results.
>>>>>
>>>>> My objects are matrices.
>>>>>
>>>>> x is a functional trait and species matrice. a is the species and
>>>>> samples
>>>>>
>>>>> Thank you
>>>>>
>>>>> 2016-02-22 12:19 GMT+00:00 PIKAL Petr <petr.pikal at precheza.cz>:
>>>>>
>>>>> > Hi
>>>>> >
>>>>> > comments inline
>>>>> >
>>>>> > > -----Original Message-----
>>>>> > > From: R-help [mailto:r-help-bounces at r-project.org] On Behalf Of
>>>>> Fabio
>>>>> > > Monteiro
>>>>> > > Sent: Monday, February 22, 2016 11:51 AM
>>>>> > > To: r-help at r-project.org
>>>>> > > Subject: [R] FD package
>>>>> > >
>>>>> > > Hi.
>>>>> > >
>>>>> > > First i would like to say that i'm really new in R. I recently
>>>>> started
>>>>> > > working with R and i'm using the FD package.
>>>>> > >
>>>>> > > I'm having some errors that doesn't make any sense.
>>>>> > >
>>>>> > > I have 2 matrix, one is the species with functional traits and the
>>>>> > > second one is the species and abundances.
>>>>> >
>>>>> > Your objects are matrices or data frames? From docs dbFD expects
>>>>> various
>>>>> > inputs byt they have to be properly formatted.
>>>>> >
>>>>> > >
>>>>> > > When I try to run the dbFD to calculate the functional diversity,
>>>>> the
>>>>> > > error is the number of species is different in x and a.
>>>>> > >
>>>>> > > I checked a lot of times and the number of species is the same and
>>>>> > > there are no mistakes in their names like spaces or caps.
>>>>> >
>>>>> > How did you checked?
>>>>> >
>>>>> > dim(trait) and dim(abund)
>>>>> >
>>>>> > shall give you the same number of rows in traits as columns in abund.
>>>>> >
>>>>> > If trait is vector, you need to use length instead of dim.
>>>>> >
>>>>> > >
>>>>> > > Can you help me?
>>>>> >
>>>>> > Without better description of your objects and code you used you
>>>>> hardly
>>>>> > get any answer. You can start by using examples from help page, which
>>>>> shall
>>>>> > work and see how your data differ from those examples.
>>>>> >
>>>>> > Cheers
>>>>> > Petr
>>>>> >
>>>>> >
>>>>> > >
>>>>> > > F?bio Monteiro
>>>>> > >
>>>>> > > [[alternative HTML version deleted]]
>>>>> > >
>>>>> > > ______________________________________________
>>>>> > > R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see
>>>>> > > https://stat.ethz.ch/mailman/listinfo/r-help
>>>>> > > PLEASE do read the posting guide http://www.R-project.org/posting-
>>>>> > > guide.html
>>>>> > > and provide commented, minimal, self-contained, reproducible code.
>>>>> >
>>>>> > ________________________________
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>>>>> ______________________________________________
>>>>> R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see
>>>>> https://stat.ethz.ch/mailman/listinfo/r-help
>>>>> PLEASE do read the posting guide
>>>>> http://www.R-project.org/posting-guide.html
>>>>> and provide commented, minimal, self-contained, reproducible code.
>>>>
>>>>
>>>>
>>>>
>>>> --
>>>> Stephen Sefick
>>>> **************************************************
>>>> Auburn University
>>>> Biological Sciences
>>>> 331 Funchess Hall
>>>> Auburn, Alabama
>>>> 36849
>>>> **************************************************
>>>> sas0025 at auburn.edu
>>>> http://www.auburn.edu/~sas0025
>>>> **************************************************
>>>>
>>>> Let's not spend our time and resources thinking about things that are so
>>>> little or so large that all they really do for us is puff us up and make us
>>>> feel like gods. We are mammals, and have not exhausted the annoying little
>>>> problems of being mammals.
>>>>
>>>> -K. Mullis
>>>>
>>>> "A big computer, a complex algorithm and a long time does not equal
>>>> science."
>>>>
>>>> -Robert Gentleman
>>>>
>>>>
>>>
>>
>>
>> --
>> Stephen Sefick
>> **************************************************
>> Auburn University
>> Biological Sciences
>> 331 Funchess Hall
>> Auburn, Alabama
>> 36849
>> **************************************************
>> sas0025 at auburn.edu
>> http://www.auburn.edu/~sas0025
>> **************************************************
>>
>> Let's not spend our time and resources thinking about things that are so
>> little or so large that all they really do for us is puff us up and make us
>> feel like gods. We are mammals, and have not exhausted the annoying little
>> problems of being mammals.
>>
>> -K. Mullis
>>
>> "A big computer, a complex algorithm and a long time does not equal
>> science."
>>
>> -Robert Gentleman
>>
>>
>
> [[alternative HTML version deleted]]
>
> ______________________________________________
> R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.
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