[R] LDheatmap

[Ashta]

Hi all,

I am  looking for an R package that calculates  a pair wise LD
(linkage disequilibrium) I came up with  library(LDheatmap).  has any
one used this library? I would appreciate if I get a help how to use
this library for my set of data..


My data set look like

Geno file
Name1 1 1 2 2 2 2
Name2 2 2 2 2 2 2
Name3 2 2 2 2 2 2
Name4  2 2 2 2 2 2
Name5 1 1 2 2 2 2


NameN  1   1 1 2 2 2 2


The other file is map file
Chromosome, SNP, Location (physical)


Thank you in advance