[R] Sampling the Distance Matrix
William Dunlap
wdunlap at tibco.com
Wed Sep 23 22:23:16 CEST 2015
> mm <- cbind(1/(1:5), sqrt(1:5))
> d <- dist(mm)
> d
1 2 3 4
2 0.6492864
3 0.9901226 0.3588848
4 1.2500000 0.6369033 0.2806086
5 1.4723668 0.8748970 0.5213550 0.2413050
> which(as.matrix(d)>0.9, arr.ind=TRUE)
row col
3 3 1
4 4 1
5 5 1
1 1 3
1 1 4
1 1 5
I.e., the distances between mm's rows 3 & 1, 4 & 1, and 5,1 are more than 0.9
The as.matrix(d) is needed because dist returns the lower triangle of
the distance
matrix and an object of class "dist" and as.matrix.dist converts that
into a matrix.
Bill Dunlap
TIBCO Software
wdunlap tibco.com
On Wed, Sep 23, 2015 at 12:15 PM, Lorenzo Isella
<lorenzo.isella at gmail.com> wrote:
> Dear All,
> Suppose you have a distance matrix stored like a dist object, for
> instance
>
> x<-rnorm(20)
> y<-rnorm(20)
>
> mm<-as.matrix(cbind(x,y))
>
> dst<-(dist(mm))
>
> Now, my problem is the following: I would like to get the rows of mm
> corresponding to points whose distance is always larger of, let's say,
> 0.9.
> In other words, if I were to compute the distance matrix on those
> selected rows of mm, apart from the diagonal, I would get all entries
> larger than 0.9.
> Any idea about how I can efficiently code that?
> Regards
>
> Lorenzo
>
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