[R] r-markdown - keeping figures

Yihui Xie xie at yihui.name
Wed Oct 21 16:55:18 CEST 2015


Yes, setting the fig.path option will prevent rmarkdown from deleting
the figure files, and the more natural way to preserve these
intermediate files is to set the rmarkdown option keep_tex or keep_md
(depending on your output format) to yes, e.g.

---
output:
  pdf_document:
    keep_tex: yes
  html_document:
    keep_md: yes
---

Regards,
Yihui
--
Yihui Xie <xieyihui at gmail.com>
Web: http://yihui.name


On Wed, Oct 21, 2015 at 7:21 AM, Jeff Newmiller
<jdnewmil at dcn.davis.ca.us> wrote:
> I think the default now is to not save them unless you set the fig.path chunk option.
>
> http://kbroman.org/knitr_knutshell/pages/Rmarkdown.html
> ---------------------------------------------------------------------------
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> Sent from my phone. Please excuse my brevity.
>
> On October 21, 2015 1:47:33 PM GMT+02:00, Bob O'Hara <rni.boh at gmail.com> wrote:
>>The figures should be saved somewhere. e.g. if you have x.Rmd, you
>>should have a X_files/ folder with subfolders for the figures (e.g.
>>X-html or X-latex). At least that's what I have.
>>
>>Bob
>>
>>On 20 October 2015 at 18:18, Witold E Wolski <wewolski at gmail.com>
>>wrote:
>>> I am running r-markdown from r-studio and can't work out how to keep
>>> the figures.
>>> I mean I have a few figures in the document and would like to have
>>> them as separate pdf's too as I have been used to have them when
>>using
>>> Sweave.
>>>
>>>
>>>
>>> best regards
>>> Witold
>>>
>>>
>>> --
>>> Witold Eryk Wolski
>>>
>>> ______________________________________________
>>> R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see
>>> https://stat.ethz.ch/mailman/listinfo/r-help
>>> PLEASE do read the posting guide
>>http://www.R-project.org/posting-guide.html
>>> and provide commented, minimal, self-contained, reproducible code.
>
> ______________________________________________
> R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.



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