[R] error using the huge R package

[David Winsemius]

On May 13, 2015, at 3:45 PM, Juan Fernandez wrote:

> Dear List
> 
> I am trying to do an association network using some expression data I have, the data is really huge: 300 samples and ~30,000 genes. I would like to apply a gaussian graphical model to my data using the huge R package.
> 
> Here is the code I am using
> 
>> dim(data)
> #[1] 317 32200
> 
>> huge.out <- huge.npn(data)
>> huge.stars <- huge.select(huge.out, criterion=“stars”)
> 
> However in this last step I got the following error:
> 
> Error in cor(x) : sampling…..in progress:10%
> Missing values present in input variable ‘x’. Consider using use = ‘pairwise.complete.obs’

Responded on StackOverflow where this duplicate question was posted yesterday

-- 
David.


> 
> Any help would be very appreciated
> 
> Juan
> 
> 
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> 
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David Winsemius
Alameda, CA, USA