[R] Unsupported Fortran 90 compiler or Fortran 90

[Prof Brian Ripley]

On 16/03/2015 10:38, Srikanth Gumma wrote:
> Hi,
>
> I'm trying to install diveRsity package in our R installation. however it
> always fails with the error message "Unsupported Fortran 90 compiler or
> Fortran 90". Below is the full output. Appreciate any help.

Ask the maintainer of the package concerned (glasso).  Its way of 
detecting the complier is flaky (and does not meet current CRAN 
requirements on cross-platform portability).

>
> R
>
> R version 3.1.2 (2014-10-31) -- "Pumpkin Helmet"
> Copyright (C) 2014 The R Foundation for Statistical Computing
> Platform: x86_64-unknown-linux-gnu (64-bit)
>
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>
>> install.packages("diversity")
> --- Please select a CRAN mirror for use in this session ---
> Warning messages:
> 1: package ‘diversity’ is not available (for R version 3.1.2)
> 2: Perhaps you meant ‘diveRsity’ ?
>> install.packages("diveRsity")
> also installing the dependencies ‘glasso’, ‘qgraph’
>
> trying URL 'http://cran.rstudio.com/src/contrib/glasso_1.8.tar.gz'
> Content type 'application/x-gzip' length 41768 bytes (40 Kb)
> opened URL
> ==================================================
> downloaded 40 Kb
>
> trying URL 'http://cran.rstudio.com/src/contrib/qgraph_1.3.1.tar.gz'
> Content type 'application/x-gzip' length 211062 bytes (206 Kb)
> opened URL
> ==================================================
> downloaded 206 Kb
>
> trying URL 'http://cran.rstudio.com/src/contrib/diveRsity_1.9.73.tar.gz'
> Content type 'application/x-gzip' length 1330144 bytes (1.3 Mb)
> opened URL
> ==================================================
> downloaded 1.3 Mb
>
> * installing *source* package ‘glasso’ ...
> ** package ‘glasso’ successfully unpacked and MD5 sums checked
>   This package requires a fortran 90 compiler. We assume
>   that your fortran 90 environment is set up appropriately.
>   Reference: Section on 'Using F95 code' in R-exts manual.
>   R_HOME is /app1/centos6.3/gnu/apps/R-3.1.2/lib64/R
>      Unsupported Fortran 90 compiler or Fortran 90
>      compilers unavailable! Stop!
> ERROR: configuration failed for package ‘glasso’
> * removing ‘/nfs/app1/centos6.3/gnu/apps/R-3.1.2/lib64/R/library/glasso’
> ERROR: dependency ‘glasso’ is not available for package ‘qgraph’
> * removing ‘/nfs/app1/centos6.3/gnu/apps/R-3.1.2/lib64/R/library/qgraph’
> ERROR: dependency ‘qgraph’ is not available for package ‘diveRsity’
> * removing ‘/nfs/app1/centos6.3/gnu/apps/R-3.1.2/lib64/R/library/diveRsity’
>
> The downloaded source packages are in
>          ‘/tmp/Rtmp2IAilr/downloaded_packages’
> Warning messages:
> 1: In install.packages("diveRsity") :
>    installation of package ‘glasso’ had non-zero exit status
> 2: In install.packages("diveRsity") :
>    installation of package ‘qgraph’ had non-zero exit status
> 3: In install.packages("diveRsity") :
>    installation of package ‘diveRsity’ had non-zero exit status
>
> Regards
> Srikanth.
>
> 	[[alternative HTML version deleted]]
>
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-- 
Brian D. Ripley,                  ripley at stats.ox.ac.uk
Emeritus Professor of Applied Statistics, University of Oxford
1 South Parks Road, Oxford OX1 3TG, UK