[R] Help with nonlinear least squares regression curve fitting
Corey Callaghan
ccallaghan2013 at fau.edu
Wed Feb 25 17:03:52 CET 2015
Hi everyone. This is my first post to this forum and I'm hoping someone can
help.
I'm trying to finish up some analysis for my thesis and this is the last
problem I have. I have calculated data for 15 different species of birds;
below is an example of one species and what the data might look like.
I have three a priori nonlinear curves that I want to test each data set
against in order to see which of the three curves has the best fit. (I
suspect the fit won't be that great for any of them in some instances.)
The curves' functions that I want to test are in the code here (hopefully
correctly):
Inverse Quadratic Curve:
fitmodel <- nls(Area ~ (-a*Year)*(Year + b), data = df, start=list(a=??,
b=??, c=??))
Sigmodial Curve:
fitmodel <- nls(Area~a/(1+exp(-(b+c*Year))), data=df, start=list(a=???,
b=???, c=??))
Double sigmoidal Curve:
fitmodel <- nls(Area~a+2b(1/(1+exp(-abs(-c*Year+d)))-1/2)*sign(-c*Year+d),
data=df, start=list(a=???, b=???, c=???)
My problem is I can't really figure out how to choose the correct starting
values to avoid getting the singular matrix error. Any help as to how to go
about this would be appreciated! Does everything look right? My method is
okay?
If I can get the fits to run I plan on using AIC to select the best curve
for each of the 15 species.
I thank you in advance for your consideration and help on this!
Cheers,
Corey Callaghan
df:
Area Year
104.7181283 1984
32.88026974 1985
56.07395863 1986
191.3422143 1987
233.4661392 1988
57.28317116 1989
201.1273404 1990
34.42570796 1991
165.8962342 1992
58.21905274 1993
114.6643724 1994
342.3461986 1995
184.8877994 1996
94.90509356 1997
45.2026941 1998
68.6196393 1999
575.2440229 2000
519.7557581 2001
904.157509 2002
1107.357517 2003
1682.876061 2004
40.55667824 2005
740.5032604 2006
885.7243469 2007
395.4190968 2008
1031.314519 2009
2597.544987 2010
1316.968695 2011
848.7093901 2012
5076.675075 2013
6132.975491 2014
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