[R] faisalconjoint

[BRC]

I am developing a r package faisalconjoint, when i run R CMD check
--as-cran faisalconjoint, got the following notes.

* using log directory
'D:/r-test-packages/faisalconjoint/faisalconjoint.Rcheck'
* using R version 3.1.2 (2014-10-31)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* checking for file 'faisalconjoint/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'faisalconjoint' version '1.15'
* checking CRAN incoming feasibility ... NOTE
Maintainer: 'Faisal Afzal Siddiqui <brc.khi at gmail.com>'
New submission
Package was archived on CRAN
* checking package namespace information ... OK
* checking package dependencies ... NOTE
  No repository set, so cyclic dependency check skipped
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'faisalconjoint' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... NOTE
Non-standard file/directory found at top level:
  'faisalconjoint-manual.pdf'
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ...
OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking PDF version of manual ... OK
* DONE
NOTE: There were 3 notes.

1. No repository set, so cyclic dependency check skipped
2. Non-standard file/directory found at top level:
 'faisalconjoint-manual.pdf'

please advise how I can remove these notes to upload the package.

I will be very thankful to you.

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