[R] BondLab Package

[Glenn Schultz]

Hi All,

I am getting closer to finalizing the package.  Below is all my information;  Description, namespace, and check from R Studio.  I know its basically lubridate as well as bond basis function.  I re-read the section on environments in Advanced R as I was thinking this is environment related.  I am going over the creating packages documentation now.  Unfortunately, whatever I am missing is not getting into my coconut.   Any ideas are appreciated.  

Here are my last issues:  
All declared Imports should be used.  Not sure what this is telling me.  I have the packages in imports
No visible global function defined this seems like it all lubridate related.  
Here is the pertinent section from check
=================================================
* checking dependencies in R code ... NOTE
Namespaces in Imports field not imported from:
  ‘ggplot2’ ‘grid’ ‘lubridate’ ‘methods’ ‘optimx’ ‘plyr’ ‘reshape2’
  ‘termstrc’
  All declared Imports should be used.
See the information on DESCRIPTION files in the chapter ‘Creating R
packages’ of the ‘Writing R Extensions’ manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
BondBasisConversion: no visible global function definition for ‘day’
BondBasisConversion: no visible global function definition for ‘month’
BondBasisConversion: no visible global function definition for ‘year’
Mtg.Scenario : ReturnAnalysis: no visible global function definition
  for ‘%m+%’
PrepaymentAssumption: no visible global function definition for ‘%m+%’
Schedule: no visible global function definition for ‘%m+%’

Here is my description file
=========================================================
Package: BondLab
Type: Package
Title: A package for the analysis of structured products
Version: 0.0.0
Date: 2013-12-08
Author: Glenn Schultz, CFA
Maintainer: Glenn Schultz <glennmschultz at me.com>
Description: The package provides a suite of software utilities for the analysis of Mortgage and Asset Backed securities
LazyLoad: yes
License: GPL(>=3.0)
Imports: termstrc, 
          reshape2, 
          ggplot2, 
          lubridate, 
          methods, 
          plyr, 
          grid, 
          optimx
Suggests: knitr,
          devtools,
          testthat
VignetteBuilder: knitr

Here is my namespace
=============================================================
# Generated by roxygen2 (4.1.0): do not edit by hand

export(CPR.To.SMM)
export(DollarRoll)
export(Effective.Convexity)
export(Effective.Duration)
export(EstimYTM)
export(Mortgage.Monthly.Payment)
export(MortgageCashFlow)
export(PPC.Ramp)
export(PassThroughAnalytics)
export(PassThroughOAS)
export(Rates)
export(Remain.Balance)
export(SMM.To.CPR)
export(SMMVector.To.CPR)
export(Sched.Prin)
export(TimeValue)
export(YTMtoPrice)
export(bondprice)
exportClasses(DollarRoll)
exportClasses(MBSDetails)
exportClasses(MortgageCashFlow)
exportClasses(MortgageOAS)
exportClasses(MortgageTermStructure)
exportClasses(Mtg.Scenario)
exportClasses(PrepaymentAssumption)
exportClasses(Scenario)

==============================================================
Here is my full check
==> devtools::check()

Updating BondLab documentation
Loading BondLab
'/Library/Frameworks/R.framework/Resources/bin/R' --vanilla CMD build  \
  '/Users/glennschultz/BondLab' --no-resave-data --no-manual 

* checking for file ‘/Users/glennschultz/BondLab/DESCRIPTION’ ... OK
* preparing ‘BondLab’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... OK
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building ‘BondLab_0.0.0.tar.gz’

'/Library/Frameworks/R.framework/Resources/bin/R' --vanilla CMD check  \
  '/var/folders/tv/sq6gmnvs13j8jrhkt87f_zmc0000gn/T//RtmpiHfQ8g/BondLab_0.0.0.tar.gz'  \
  --timings 

* using log directory ‘/Users/glennschultz/BondLab.Rcheck’
* using R version 3.1.2 (2014-10-31)
* using platform: x86_64-apple-darwin13.4.0 (64-bit)
* using session charset: UTF-8
* checking for file ‘BondLab/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘BondLab’ version ‘0.0.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘BondLab’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... NOTE
Non-standard files/directories found at top level:
  ‘BondData’ ‘Groups’ ‘PrepaymentModel’ ‘RAID’ ‘RDME’ ‘REMICData’
  ‘RatesData’ ‘Scenario’ ‘Schedules’ ‘Tranches’ ‘WaterFall’
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Namespaces in Imports field not imported from:
  ‘ggplot2’ ‘grid’ ‘lubridate’ ‘methods’ ‘optimx’ ‘plyr’ ‘reshape2’
  ‘termstrc’
  All declared Imports should be used.
See the information on DESCRIPTION files in the chapter ‘Creating R
packages’ of the ‘Writing R Extensions’ manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
BondBasisConversion: no visible global function definition for ‘day’
BondBasisConversion: no visible global function definition for ‘month’
BondBasisConversion: no visible global function definition for ‘year’
Mtg.Scenario : ReturnAnalysis: no visible global function definition
  for ‘%m+%’
PrepaymentAssumption: no visible global function definition for ‘%m+%’
Schedule: no visible global function definition for ‘%m+%’
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
  ‘CPR.To.SMM’ ‘DollarRoll’ ‘Effective.Convexity’ ‘Effective.Duration’
  ‘EstimYTM’ ‘Mortgage.Monthly.Payment’ ‘MortgageCashFlow’ ‘PPC.Ramp’
  ‘PassThroughAnalytics’ ‘PassThroughOAS’ ‘Rates’ ‘Remain.Balance’
  ‘SMM.To.CPR’ ‘SMMVector.To.CPR’ ‘Sched.Prin’ ‘TimeValue’ ‘YTMtoPrice’
  ‘bondprice’
Undocumented S4 classes:
  ‘DollarRoll’ ‘MBSDetails’ ‘MortgageCashFlow’ ‘MortgageOAS’
  ‘MortgageTermStructure’ ‘Mtg.Scenario’ ‘PrepaymentAssumption’
  ‘Scenario’
All user-level objects in a package (including S4 classes and methods)
should have documentation entries.
See the chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... NONE
* checking for unstated dependencies in tests ... OK
* checking tests ...
  Running ‘test-all.R’ OK
* checking for unstated dependencies in vignettes ...
 OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
   ‘BondLab.Rmd’ using ‘UTF-8’ ... OK
 OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
WARNING: There was 1 warning.
NOTE: There were 3 notes.
See
  ‘/Users/glennschultz/BondLab.Rcheck/00check.log’
for details.



R CMD check succeeded