[R] problems with packages installation
Jeff Newmiller
jdnewmil at dcn.davis.CA.us
Fri Feb 13 15:56:21 CET 2015
I agree that the PG muddies the water a bit on this topic. However, the web page from which you downloaded the patched version warns:
"This is not an official release of R. Please check bugs in this version against the official release before reporting them."
When a new version is under development, the number of bugs often increases temporarily by quite a bit. Any use you make of a patched or development version is at your own risk, and should be undertaken for two reasons only: to address a specific problem you are having with the released version, or because you want to help test the unreleased version out of the goodness of your heart (bless you). In either case, chatter about bugs you encounter that are not in the released version belongs on R-devel.
If you can reproduce the problem in a released version, posting on R-help would be more appropriate, but if you are sure it is a bug then filling a report is the right thing to do.
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Sent from my phone. Please excuse my brevity.
On February 13, 2015 4:03:46 AM PST, PIKAL Petr <petr.pikal at precheza.cz> wrote:
>Hi Jeff
>
>Can you be more specific why question about "using" R-devel shall be
>directed to R-devel help list?
>
>Posting guide tells me:
>
>R-help is intended to be comprehensible to people who want to use R to
>solve problems but who are not necessarily interested in or
>knowledgeable about programming. R-devel is intended for questions and
>discussion about code development in R. Questions likely to prompt
>discussion unintelligible to non-programmers should go to to R-devel.
>For example, questions involving C, C++, etc. code should go to
>R-devel. More general questions involving pure R code and questions
>likely to be of interest to the large and diverse set of subscribers to
>R-help should go to R-help.
>
>and
>
>If you are using an old version of R and think it does not work
>properly, upgrade to the latest version and try that, before posting.
>If possible, try the current R-patched or R-devel version of R (see the
>FAQ for details), to see if the problem has already been addressed.
>
>So even Posting guide suggests to poor user not to use obsolete version
>of R and try R-patched or R-devel.
>
>To be honest - in R-patched (3.1.2)
>
>setInternet2(TRUE)
>utils:::menuInstallPkgs()
>
>works without problems and the same applies to R-devel version from
>June (3.2.0 - 66175) but it throws error in (3.2.0 - 67792).
>
>There is 15814 bug report about Package Installation which is replied
>by Brian Ripley:
>
>The 'package installer' is the program which installs the Apple
>package. If you mean the 'Package Installer' menu item in R.app, there
>is a known issue (but that is only known to causes failures, not
>freezes).
>
>I tried Richard's suggestion (thanks Richard) and with small
>modification (I do not want to install from sources)
>
>install.packages("ggplot2", repos="http://cran.at.r-project.org",
>dependencies=TRUE)
>
>works as expected, therefore the problem is in **menu driven
>installation procedure**. Shall I fill a bug report? Or it is already
>known to R developers?
>
>Best regards
>Petr
>
>
>> -----Original Message-----
>> From: Jeff Newmiller [mailto:jdnewmil at dcn.davis.CA.us]
>> Sent: Thursday, February 12, 2015 6:15 PM
>> To: PIKAL Petr; r-help at r-project.org
>> Subject: Re: [R] problems with packages installation
>>
>> Time to (re)read the Posting Guide... questions about unreleased
>> versions of R are off topic here. Go to R-devel.
>>
>-----------------------------------------------------------------------
>> ----
>> Jeff Newmiller The ..... ..... Go
>> Live...
>> DCN:<jdnewmil at dcn.davis.ca.us> Basics: ##.#. ##.#. Live
>> Go...
>> Live: OO#.. Dead: OO#..
>> Playing
>> Research Engineer (Solar/Batteries O.O#. #.O#. with
>> /Software/Embedded Controllers) .OO#. .OO#.
>> rocks...1k
>>
>-----------------------------------------------------------------------
>> ----
>> Sent from my phone. Please excuse my brevity.
>>
>> On February 12, 2015 11:40:48 AM EST, PIKAL Petr
>> <petr.pikal at precheza.cz> wrote:
>> >Dear all
>> >
>> >I just switched to new version
>> >
>> >> version
>> > _
>> >platform i386-w64-mingw32
>> >arch i386
>> >os mingw32
>> >system i386, mingw32
>> >status Under development (unstable)
>> >major 3
>> >minor 2.0
>> >year 2015
>> >month 02
>> >day 11
>> >svn rev 67792
>> >language R
>> >version.string R Under development (unstable) (2015-02-11 r67792)
>> >nickname Unsuffered Consequences
>> >
>> >and started to have problems with installing packages through utils
>> >
>> >> setInternet2(TRUE)
>> >> utils:::menuInstallPkgs()
>> >--- Please select a CRAN mirror for use in this session --- also
>> >installing the dependencies ‘colorspace’, ‘Rcpp’, ‘stringr’,
>> >‘RColorBrewer’, ‘dichromat’, ‘munsell’, ‘labeling’, ‘plyr’,
>‘digest’,
>> >‘gtable’, ‘reshape2’, ‘scales’, ‘proto’
>> >
>> >trying URL
>> >'http://cran.at.r-project.org/src/contrib/colorspace_1.2-4.zip'
>> >Error in download.file(url, destfile, method, mode = "wb", ...) :
>> >cannot open URL
>> >'http://cran.at.r-project.org/src/contrib/colorspace_1.2-4.zip'
>> >In addition: Warning message:
>> >In download.file(url, destfile, method, mode = "wb", ...) :
>> > cannot open: HTTP status was '404 Not Found'
>> >Warning in download.packages(pkgs, destdir = tmpd, available =
>> >available, :
>> > download of package ‘colorspace’ failed ....
>> >
>> >Before I start to disturb our IT I just want to know what could be
>the
>> >issue. AFAIK I did not change anything on my PC. In previous R-devel
>> >version I used this package installation worked (and still works)
>> >
>> >> utils:::menuInstallPkgs()
>> >--- Please select a CRAN mirror for use in this session --- trying
>URL
>> >'http://cran.at.r-project.org/bin/windows/contrib/3.2/mice_2.22.zip'
>> >Content type 'application/zip' length 1148843 bytes (1.1 Mb) opened
>> URL
>> >downloaded 1.1 Mb
>> >
>> >package ‘mice’ successfully unpacked and MD5 sums checked
>> >
>> >The downloaded binary packages are in
>> >C:\Documents and Settings\PikalP\Local
>> >Settings\Temp\RtmpgZuQB3\downloaded_packages
>> >
>> >> version
>> > _
>> >platform i386-w64-mingw32
>> >arch i386
>> >os mingw32
>> >system i386, mingw32
>> >status Under development (unstable)
>> >major 3
>> >minor 2.0
>> >year 2014
>> >month 07
>> >day 16
>> >svn rev 66175
>> >language R
>> >version.string R Under development (unstable) (2014-07-16 r66175)
>> >nickname Unsuffered Consequences
>> >
>> >can you suggest what changed between those 2 R versions what
>prevents
>> >me in convenient installation of packages.
>> >
>> >Petr
>> >
>> >BTW. I can install packages manually but when there are many
>> >dependencies it can be rather tricky.
>> >
>> >
>
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