[R] lattice strip.custom in plot for multiple groups
Luigi Marongiu
marongiu.luigi at gmail.com
Fri Dec 18 21:22:16 CET 2015
Dear all,
I am plotting the count of some data subdivided in different groups.
the variables i am using are:
A = tests performed
B = positive/negative results (but in this case the results are all
positive, so all 1)
C = multiple (1) or single (0) test applied
D = count of instances
E = cases (1) or controls (0)
the plot looks the way I need and it is created with lattice's
barchart. However the strip should indicate "cases"/"controls" and
instead only shows "E"/"E" so I think I messed somewhere.
Would you know what did I missed?
Thank you
L
The example:
>>>
A <- c('a', 'b', 'c', 'd', 'a', 'b', 'c', 'd',
'b', 'c', 'd', 'b', 'c', 'd')
B <- c(1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
1, 1, 1)
C <- c(0, 0, 0, 0, 1, 1, 1, 1, 0, 0, 0,
1, 1, 1)
D <- c(4, 120, 7, 23, 4, 24, 3, 12, 7, 1,
1, 5, 0, 0)
E <- c(0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1,
1, 1, 1)
DF <- data.frame(A, B, C, D, E, stringsAsFactors = FALSE)
library(lattice)
barchart(
A ~ D|E,
DF,
groups = C,
stack = TRUE,
main = "Comparison of test results",
xlab = "Count",
col = c("yellow", "orange"),
par.settings = list(
strip.background = list(col="light grey"),
superpose.polygon=list(col= c("yellow", "orange"))
),
scales = list(
alternating = FALSE
),
key = list(
space="top",
columns=2,
text=list(c("Single infections", "Multiple infections"), col="black"),
rectangles=list(col=c("yellow", "orange"))
),
strip = strip.custom(factor.levels = c("Cases","Controls"),
par.strip.text = list(cex = 1)
)
)
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