[R] problems with plotting/graphics after changing my computer

[Alexander Moßbrucker]

I am not surve, as I cannot start the crashed computer I used before. I
guess it might be the same versions, I installed them on my crashed
computer in October, and now reinstalled them on my new computer in
December, thus only 2-3 months difference.



<https://www.avast.com/lp-safe-emailing?utm_medium=email&utm_source=link&utm_campaign=sig-email&utm_content=webmail>
This
email has been sent from a virus-free computer protected by Avast.
www.avast.com
<https://www.avast.com/lp-safe-emailing?utm_medium=email&utm_source=link&utm_campaign=sig-email&utm_content=webmail>
<#DDB4FAA8-2DD7-40BB-A1B8-4E2AA1F9FDF2>

2015-12-10 15:04 GMT+07:00 PIKAL Petr <petr.pikal at precheza.cz>:

> Hi
>
>
>
> Reply to the list too, somebody could answer your question better than
> myself.
>
>
>
> You say that it is the same script. OK. But is it also the same version of
> R and ctmm?
>
>
>
> Cheers
>
> Petr
>
>
>
> *From:* Alexander Moßbrucker [mailto:islandelephants at gmail.com]
> *Sent:* Thursday, December 10, 2015 8:50 AM
> *To:* PIKAL Petr
> *Subject:* Re: [R] problems with plotting/graphics after changing my
> computer
>
>
>
> Hi Petr,
>
> thank you for your quick reply. I have the script now attached as word
> doc, hope that is readable now.
>
> There must be another problem, because I could plot the AKDE very easily
> on my old computer, using exactly the same script and data and the same
> commands and all....thus it is very strange if suddenly on my new computer
> R doesn't recognize the command any more....
>
> I also attached the ctmm PDF, the example is directly taken from this PDF,
> from the section "akde"
>
>
>
> Best, Alex
>
>
>
>
> <https://www.avast.com/lp-safe-emailing?utm_medium=email&utm_source=link&utm_campaign=sig-email&utm_content=webmail>
>
> This email has been sent from a virus-free computer protected by Avast.
> www.avast.com
> <https://www.avast.com/lp-safe-emailing?utm_medium=email&utm_source=link&utm_campaign=sig-email&utm_content=webmail>
>
>
>
> 2015-12-10 14:23 GMT+07:00 PIKAL Petr <petr.pikal at precheza.cz>:
>
> Hi
>
> 1. Do not post in HTML. Your mail is corrupted and almost unreadable.
> 2. As far I I could decipher it, your plot call is
>
> plot(cilla,AKDE=KD2)
>
> According to docs the plot function does not have parameter called AKDE
>
> plot(x, CTMM=NULL, UD=NULL, level.UD=0.95, level=0.95, DF="CDF", col="red",
> col.level="black", col.DF="blue", col.grid="grey", fraction=1, add=FALSE,
> xlim=NULL,
> ylim=NULL, ...)
>
> but I believe that akde result shall be transferred to UD parameter.
>
> UD Optional UD object such as from the output of akde or list of such
> objects
>
> So your plot shall be called
>
> plot(cilla, UD=KD2)
>
> I do not have any experience with ctmm though, so I may completely miss
> the point. But if I am right, you could find all this in help page the same
> way as I did and probably quicker.
>
> Cheers
> Petr
>
>
> > -----Original Message-----
> > From: R-help [mailto:r-help-bounces at r-project.org] On Behalf Of
> > Alexander Moßbrucker
> > Sent: Thursday, December 10, 2015 7:47 AM
> > To: r-help at r-project.org
> > Subject: [R] problems with plotting/graphics after changing my computer
> >
> > Dear all,
> >
> > I have worked on AKDEs using the package ctmm. Because my old computer
> > often crashed, I bought a new one and reinstalled all the software,
> > including r.
> >
> > All seemed to work fine, but when I wanted to plot several results I
> > encountered error messages.
> >
> > I tried many different plots, some plots work, others not, I could't
> > find
> > out why. The error message is always " ..... is not a graphical
> > parameter".
> > I am using exactly the same r script and packages as before on my old
> > computer.
> >
> > Would be great if you could help me with this....., best, Alex
> >
> > Please find below an example from the ctmm package:
> >
> > > # Load package and data> library(ctmm)> data(buffalo)> cilla <-
> > buffalo[[1]]> # Fit a continuous-velocity model with tau ~ c(10 days, 1
> > hour)> # see help(variogram.fit)> m2 <- ctmm(tau=c(10*24*60^2,60^2))>
> > M2 <- ctmm.fit(cilla,m2)> # Compute akde object> KD2 <- akde(cilla,M2)>
> > # Plot data with AKDE contours> plot(cilla,AKDE=KD2)Warning messages:1:
> > In plot.window(...) : "AKDE" is not a graphical parameter2: In
> > plot.xy(xy, type, ...) : "AKDE" is not a graphical parameter3: In
> > axis(side = side, at = at, labels = labels, ...) :
> >   "AKDE" is not a graphical parameter4: In axis(side = side, at = at,
> > labels = labels, ...) :
> >   "AKDE" is not a graphical parameter5: In box(...) : "AKDE" is not a
> > graphical parameter6: In title(...) : "AKDE" is not a graphical
> > parameter7: In plot.xy(xy.coords(x, y), type = type, ...) :
> >   "AKDE" is not a graphical parameter
> >
> >
> >
> >
> >
>
>
>
> ------------------------------
> Tento e-mail a jakékoliv k němu připojené dokumenty jsou důvěrné a jsou
> určeny pouze jeho adresátům.
> Jestliže jste obdržel(a) tento e-mail omylem, informujte laskavě
> neprodleně jeho odesílatele. Obsah tohoto emailu i s přílohami a jeho kopie
> vymažte ze svého systému.
> Nejste-li zamýšleným adresátem tohoto emailu, nejste oprávněni tento email
> jakkoliv užívat, rozšiřovat, kopírovat či zveřejňovat.
> Odesílatel e-mailu neodpovídá za eventuální škodu způsobenou modifikacemi
> či zpožděním přenosu e-mailu.
>
> V případě, že je tento e-mail součástí obchodního jednání:
> - vyhrazuje si odesílatel právo ukončit kdykoliv jednání o uzavření
> smlouvy, a to z jakéhokoliv důvodu i bez uvedení důvodu.
> - a obsahuje-li nabídku, je adresát oprávněn nabídku bezodkladně přijmout;
> Odesílatel tohoto e-mailu (nabídky) vylučuje přijetí nabídky ze strany
> příjemce s dodatkem či odchylkou.
> - trvá odesílatel na tom, že příslušná smlouva je uzavřena teprve
> výslovným dosažením shody na všech jejích náležitostech.
> - odesílatel tohoto emailu informuje, že není oprávněn uzavírat za
> společnost žádné smlouvy s výjimkou případů, kdy k tomu byl písemně zmocněn
> nebo písemně pověřen a takové pověření nebo plná moc byly adresátovi tohoto
> emailu případně osobě, kterou adresát zastupuje, předloženy nebo jejich
> existence je adresátovi či osobě jím zastoupené známá.
>
> This e-mail and any documents attached to it may be confidential and are
> intended only for its intended recipients.
> If you received this e-mail by mistake, please immediately inform its
> sender. Delete the contents of this e-mail with all attachments and its
> copies from your system.
> If you are not the intended recipient of this e-mail, you are not
> authorized to use, disseminate, copy or disclose this e-mail in any manner.
> The sender of this e-mail shall not be liable for any possible damage
> caused by modifications of the e-mail or by delay with transfer of the
> email.
>
> In case that this e-mail forms part of business dealings:
> - the sender reserves the right to end negotiations about entering into a
> contract in any time, for any reason, and without stating any reasoning.
> - if the e-mail contains an offer, the recipient is entitled to
> immediately accept such offer; The sender of this e-mail (offer) excludes
> any acceptance of the offer on the part of the recipient containing any
> amendment or variation.
> - the sender insists on that the respective contract is concluded only
> upon an express mutual agreement on all its aspects.
> - the sender of this e-mail informs that he/she is not authorized to enter
> into any contracts on behalf of the company except for cases in which
> he/she is expressly authorized to do so in writing, and such authorization
> or power of attorney is submitted to the recipient or the person
> represented by the recipient, or the existence of such authorization is
> known to the recipient of the person represented by the recipient.
>

	[[alternative HTML version deleted]]