[R] lme4 package installation

PIKAL Petr petr.pikal at precheza.cz
Mon Aug 17 08:43:27 CEST 2015 

Hi

try tu put line

setInternet2(TRUE)

into your Rprofile.site file (located in etc directory of R installation) and restart R.


Cheers
Petr


> -----Original Message-----
> From: R-help [mailto:r-help-bounces at r-project.org] On Behalf Of Teck
> Kiang Tan
> Sent: Friday, August 14, 2015 11:21 AM
> To: Uwe Ligges
> Cc: r-help at r-project.org; aurora.gonzalez at openmailbox.org
> Subject: Re: [R] lme4 package installation
>
> Thanks Uwe Ligges for the suggestion.
> I tried using setInternet2() but also failed.
> I tried for several other countries but also failed.
> Any other suggestion to overcome it.
> Thanks.
>
>
> Warning: unable to access index for repository
> http://cran.utstat.utoronto.ca/src/contrib
> Warning: unable to access index for repository
> http://www.stats.ox.ac.uk/pub/RWin/src/contrib
> Warning: unable to access index for repository
> http://cran.utstat.utoronto.ca/bin/windows/contrib/3.2
> Warning: unable to access index for repository
> http://www.stats.ox.ac.uk/pub/RWin/bin/windows/contrib/3.2
>
>
> On Fri, Aug 14, 2015 at 1:29 PM, Uwe Ligges <ligges at statistik.tu-
> dortmund.de
> > wrote:
>
> >
> >
> > On 13.08.2015 22:52, Teck Kiang Tan wrote:
> >
> >> Hi all
> >>
> >> I have problem in installation lme4 and have tried over the past 2
> days.
> >> It
> >> failed to install from the various countries.
> >>
> >> install.packages("lme4")
> >>>
> >> Warning: unable to access index for repository
> >> http://cran.stat.nus.edu.sg/src/contrib
> >>
> >
> >
> > This mirror does not respond whn I just tried, choose another one.
> >
> >
> > Warning: unable to access index for repository
> >> http://www.stats.ox.ac.uk/pub/RWin/src/contrib
> >>
> >
> > This one works for me (but does not contain lme4).
> > Perhaps also run setInternet2() before you try again in cae you need
> > proxy settings.
> >
> > Best,
> > Uwe Ligges
> >
> >
> >
> >
> > Warning: unable to access index for repository
> >> http://cran.stat.nus.edu.sg/bin/windows/contrib/3.2
> >>
> >> Warning message:
> >> package ‘lme4’ is not available (for R version 3.2.1)
> >>
> >> Teck Kiang
> >>
> >>
> >> On Thu, Aug 13, 2015 at 11:09 PM, Thierry Onkelinx <
> >> thierry.onkelinx at inbo.be
> >>
> >>> wrote:
> >>>
> >>
> >> Have you trying installing it directly from CRAN?
> >>>
> >>> install.packages("lme4")
> >>>
> >>> Do you have all dependencies installed? install.packages() from
> CRAN
> >>> will take care of that. You repos = NULL you have to install all
> >>> dependencies manually.
> >>>
> >>> ir. Thierry Onkelinx
> >>> Instituut voor natuur- en bosonderzoek / Research Institute for
> >>> Nature and Forest team Biometrie & Kwaliteitszorg / team Biometrics
> >>> & Quality Assurance Kliniekstraat 25 1070 Anderlecht Belgium
> >>>
> >>> To call in the statistician after the experiment is done may be no
> >>> more than asking him to perform a post-mortem examination: he may
> be
> >>> able to say what the experiment died of. ~ Sir Ronald Aylmer Fisher
> >>> The plural of anecdote is not data. ~ Roger Brinner The combination
> >>> of some data and an aching desire for an answer does not ensure
> that
> >>> a reasonable answer can be extracted from a given body of data.
> >>> ~ John Tukey
> >>>
> >>> 2015-08-13 16:13 GMT+02:00 <aurora.gonzalez at openmailbox.org>:
> >>>
> >>> Hello
> >>>>
> >>>> I've downloaded the tar.gz file of the package "lme4" and when I
> >>>> use the
> >>>> coomand:
> >>>>
> >>>> install.packages("lme4_1.1-8.tar.gz", repos = NULL, type =
> >>>> "source")
> >>>>
> >>>> appears an error that suspends the installation:
> >>>>
> >>>>
> >>>> In file included from external.cpp:8:0:
> >>>> predModule.h:12:23: fatal error: RcppEigen.h: No such file or
> >>>> directory compilation terminated.
> >>>> make: *** [external.o] Error 1
> >>>> ERROR: compilation failed for package ‘lme4’
> >>>> * removing ‘/home/aurora/R/x86_64-pc-linux-gnu-library/3.2/lme4’
> >>>>
> >>>>
> >>>>
> >>>> Does anyone know how to fix it? Thank you very much!
> >>>>
> >>>>
> >>>> My sessionInfo:
> >>>>
> >>>>
> >>>> R version 3.2.1 (2015-06-18)
> >>>> Platform: x86_64-pc-linux-gnu (64-bit) Running under: Ubuntu
> >>>> precise (12.04.5 LTS)
> >>>>
> >>>> locale:
> >>>>   [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C
> >>>>   [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8
> >>>>   [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8
> >>>>   [7] LC_PAPER=en_US.UTF-8       LC_NAME=C
> >>>>   [9] LC_ADDRESS=C               LC_TELEPHONE=C
> >>>> [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
> >>>>
> >>>> attached base packages:
> >>>> [1] stats     graphics  grDevices utils     datasets  methods
> >>>> [7] base
> >>>>
> >>>> loaded via a namespace (and not attached):
> >>>> [1] tools_3.2.1
> >>>>
> >>>> ______________________________________________
> >>>> R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see
> >>>> https://stat.ethz.ch/mailman/listinfo/r-help
> >>>> PLEASE do read the posting guide
> >>>> http://www.R-project.org/posting-guide.html
> >>>> and provide commented, minimal, self-contained, reproducible code.
> >>>>
> >>>
> >>>          [[alternative HTML version deleted]]
> >>>
> >>> ______________________________________________
> >>> R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see
> >>> https://stat.ethz.ch/mailman/listinfo/r-help
> >>> PLEASE do read the posting guide
> >>> http://www.R-project.org/posting-guide.html
> >>> and provide commented, minimal, self-contained, reproducible code.
> >>>
> >>>
> >>         [[alternative HTML version deleted]]
> >>
> >> ______________________________________________
> >> R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see
> >> https://stat.ethz.ch/mailman/listinfo/r-help
> >> PLEASE do read the posting guide
> >> http://www.R-project.org/posting-guide.html
> >> and provide commented, minimal, self-contained, reproducible code.
> >>
> >>
>
>       [[alternative HTML version deleted]]
>
> ______________________________________________
> R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide http://www.R-project.org/posting-
> guide.html
> and provide commented, minimal, self-contained, reproducible code.

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