[R] cut variable within a loop
Janka VANSCHOENWINKEL
janka.vanschoenwinkel at uhasselt.be
Sun Aug 16 17:57:15 CEST 2015
Hi David,
Thanks for your comment. I'll explain what I want to do. I explained it
already earlier but the explanation might have gone lost in some of the
emails.
The variable irrigation ranges from 0 to 100. (maybe not in de small sample
I gave, but in reality I have over 60000 observations and there the
variable ranges from 0 to 100). I want to make (and use) 100 different
samples. The sample is based each time on the "i" that I put at the
beginning of the loop.
So:
i = 1: this means there are 2 subsets. One from 0-1, another from 1-100
i = 2: this means there are 2 subsets. One from 0-2, another from 2-100
i = 3: this means there are 2 subsets. One from 0-3, another from 3-100
i = 4: this means there are 2 subsets. One from 0-4, another from 4-100
...
i = 96: this means there are 2 subsets. One from 0-96, another from 96-100
i = 97: this means there are 2 subsets. One from 0-97, another from 97-100
i = 98: this means there are 2 subsets. One from 0-98, another from 98-100
i = 99: this means there are 2 subsets. One from 0-99, another from 99-100
It might be possible that i = 1 and i = 2 give the same results in the
small dataset. But in the full dataset all numbers are represented.
The cut2 function is capable of "cutting" a sample based on a number
supplied. Yet, when I tell him this number is "i", then it doesn't work. If
instead I write that the number is 10, then it does work and it gives me 2
subsets from 0-10 and from 10-100.
Hope this is more clear!
Janka
2015-08-14 20:10 GMT+02:00 David Winsemius <dwinsemius at comcast.net>:
>
> When using a function in R you may need to supply an argument name. Are
> you expecting this to be the number of groups. I cannot decipher the intent
> here with such sparse commentary, but this call to `cut2` does not make
> sense to me. Perhaps you meant the number of groups? .... in which case you
> need cut2( Alldata$irrigation, g=i ), since the arguments to cut2 are not
> that same as the arguments to cut.
>
> At the moment you are implicitly sending on the first pass a 1 and then on
> the second pass a 2 to the second argument of cut2 which is the `breaks`
> argument. So you wold be getting two different factors each with different
> cut-point levels. I looked at your data and in point of fact there would be
> no difference since you have 29 zero values and no values between 0 and 1.
>
> > table(cut2(dat$irrigation, 1))
>
> 0 [ 1,100]
> 29 21
> > table(cut2(dat$irrigation, 2))
>
> 0 [ 2,100]
> 29 21
>
>
>
>
> > levels(Alldata$irri)<-c("0","1")
> >
> > Alldata_Rainfed<-subset(Alldata, irri == 0)
> > Alldata_Irrigation<-subset(Alldata, irri == 1)
> >
> > Alldata_Rainfed$w<-Alldata_Rainfed$b48+Alldata_Rainfed$b50
> > Alldata_Irrigation$w<-Alldata_Irrigation$b48+Alldata_Irrigation$b50
> >
> > OLS_Rainfed <- lm(LnALVperHA~ps1+ps2+ps3+ps4+ts1+ts2+ts3+ts4+
> > ps1sq+ps2sq+ps3sq+ps4sq+ts1sq+ts2sq+ts3sq+ts4sq+
> > pdnsty+portsML+cities500k+rentedland+subsidies1+
> > elevmean+elevrange+
> > t_gravel+t_gravel+t_ph_h2o+t_silt+t_sand+
> > AT+BE+DK+ES+FI+FR+GR+IE+IT+LU+NL+PT+SE+WDE+EDE+UK,
> > weights=w,Alldata_Rainfed)
> >
> > attach(Alldata_Rainfed)
> >
> > CoefRainfed_ps1 <- OLS_Rainfed$coeff[2]
> > CoefRainfed_ps2 <- OLS_Rainfed$coeff[3]
> > CoefRainfed_ps3 <- OLS_Rainfed$coeff[4]
> > CoefRainfed_ps4 <- OLS_Rainfed$coeff[5]
> > CoefRainfed_ts1 <- OLS_Rainfed$coeff[6]
> > CoefRainfed_ts2 <- OLS_Rainfed$coeff[7]
> > CoefRainfed_ts3 <- OLS_Rainfed$coeff[8]
> > CoefRainfed_ts4 <- OLS_Rainfed$coeff[9]
> > CoefRainfed_ps1sq <- OLS_Rainfed$coeff[10]
> > CoefRainfed_ps2sq <- OLS_Rainfed$coeff[11]
> > CoefRainfed_ps3sq <- OLS_Rainfed$coeff[12]
> > CoefRainfed_ps4sq <- OLS_Rainfed$coeff[13]
> > CoefRainfed_ts1sq <- OLS_Rainfed$coeff[14]
> > CoefRainfed_ts2sq <- OLS_Rainfed$coeff[15]
> > CoefRainfed_ts3sq <- OLS_Rainfed$coeff[16]
> > CoefRainfed_ts4sq <- OLS_Rainfed$coeff[17]
> >
> > attach(Alldata_Rainfed)
> >
> >
> > ###### MARGINAL EFFECTS SEASONAL and YEARLY and REGIONAL (EU or COUNTRY
> level)
> > # Maar dit is dus de marginale impact per LnALVperHA?
> >
> > Alldata_Rainfed$MEts1 =
> > CoefRainfed_ts1+2*CoefRainfed_ts1sq*Alldata_Rainfed$ts1
> > Alldata_Rainfed$MEts2 =
> > CoefRainfed_ts2+2*CoefRainfed_ts2sq*Alldata_Rainfed$ts2
> > Alldata_Rainfed$MEts3 =
> > CoefRainfed_ts3+2*CoefRainfed_ts3sq*Alldata_Rainfed$ts3
> > Alldata_Rainfed$MEts4 =
> > CoefRainfed_ts4+2*CoefRainfed_ts4sq*Alldata_Rainfed$ts4
> > Alldata_Rainfed$MEt = Alldata_Rainfed$MEts1 +
> > Alldata_Rainfed$MEts2 + Alldata_Rainfed$MEts3 + Alldata_Rainfed$MEts4
> >
> > Alldata_Rainfed$MEps1 =
> > CoefRainfed_ps1+2*CoefRainfed_ps1sq*Alldata_Rainfed$ps1
> > Alldata_Rainfed$MEps2 =
> > CoefRainfed_ps2+2*CoefRainfed_ps2sq*Alldata_Rainfed$ps2
> > Alldata_Rainfed$MEps3 =
> > CoefRainfed_ps3+2*CoefRainfed_ps3sq*Alldata_Rainfed$ps3
> > Alldata_Rainfed$MEps4 =
> > CoefRainfed_ps4+2*CoefRainfed_ps4sq*Alldata_Rainfed$ps4
> > Alldata_Rainfed$MEp = Alldata_Rainfed$MEps1 +
> > Alldata_Rainfed$MEps2 + Alldata_Rainfed$MEps3 + Alldata_Rainfed$MEps4
> >
> >
> > Alldata_Rainfed$weight2<-Alldata_Rainfed$b48+Alldata_Rainfed$b50
> > attach(Alldata_Rainfed)
> > library(stats)
> > MEt_Rainfed<-weighted.mean(MEt,weight2)
> > MEp_Rainfed<-weighted.mean(MEp,weight2)
> >
> >
> >
> > attach(Alldata_Irrigation)
> >
> > OLS_Irrigation <- lm(LnALVperHA~ps1+ps2+ps3+ps4+ts1+ts2+ts3+ts4+
> > ps1sq+ps2sq+ps3sq+ps4sq+ts1sq+ts2sq+ts3sq+ts4sq+
> > pdnsty+portsML+cities500k+rentedland+subsidies1+
> > elevmean+elevrange+
> > t_gravel+t_gravel+t_ph_h2o+t_silt+t_sand+
> >
> AT+BE+DK+ES+FI+FR+GR+IE+IT+LU+NL+PT+SE+WDE+EDE+UK,
> > weights=w,Alldata_Irrigation)
> >
> >
> >
> > CoefIrrigation_ps1 <- OLS_Irrigation$coeff[2]
> > CoefIrrigation_ps2 <- OLS_Irrigation$coeff[3]
> > CoefIrrigation_ps3 <- OLS_Irrigation$coeff[4]
> > CoefIrrigation_ps4 <- OLS_Irrigation$coeff[5]
> > CoefIrrigation_ts1 <- OLS_Irrigation$coeff[6]
> > CoefIrrigation_ts2 <- OLS_Irrigation$coeff[7]
> > CoefIrrigation_ts3 <- OLS_Irrigation$coeff[8]
> > CoefIrrigation_ts4 <- OLS_Irrigation$coeff[9]
> > CoefIrrigation_ps1sq <- OLS_Irrigation$coeff[10]
> > CoefIrrigation_ps2sq <- OLS_Irrigation$coeff[11]
> > CoefIrrigation_ps3sq <- OLS_Irrigation$coeff[12]
> > CoefIrrigation_ps4sq <- OLS_Irrigation$coeff[13]
> > CoefIrrigation_ts1sq <- OLS_Irrigation$coeff[14]
> > CoefIrrigation_ts2sq <- OLS_Irrigation$coeff[15]
> > CoefIrrigation_ts3sq <- OLS_Irrigation$coeff[16]
> > CoefIrrigation_ts4sq <- OLS_Irrigation$coeff[17]
> >
> > attach(Alldata_Irrigation)
> > # gives the residual errors in Y
> > Alldata_Irrigation$residuals <-resid(OLS_Irrigation)
> >
> > # gives the predicted values for Ln_Y
> > Alldata_Irrigation$Ln_y_hat <-fitted(OLS_Irrigation)
> >
> > # Zelf functie rmse maken
> > rmse <- function(error)
> > {
> > sqrt(mean(error^2))
> > }
> > Alldata_Irrigation$y_hat <-
> >
> exp(Alldata_Irrigation$Ln_y_hat)*exp(0.5*(rmse(OLS_Irrigation$residuals))^2)
> >
> > # absolute impact (landwaarde current)
> >
> Alldata_Irrigation$absolute.current<-Alldata_Irrigation$y_hat*Alldata_Irrigation$se025*Alldata_Irrigation$sys02
> >
> >
> > ###### MARGINAL EFFECTS SEASONAL and YEARLY and REGIONAL (EU or COUNTRY
> level)
> > # Maar dit is dus de marginale impact per LnALVperHA?
> >
> > Alldata_Irrigation$MEts1 =
> > CoefIrrigation_ts1+2*CoefIrrigation_ts1sq*Alldata_Irrigation$ts1
> > Alldata_Irrigation$MEts2 =
> > CoefIrrigation_ts2+2*CoefIrrigation_ts2sq*Alldata_Irrigation$ts2
> > Alldata_Irrigation$MEts3 =
> > CoefIrrigation_ts3+2*CoefIrrigation_ts3sq*Alldata_Irrigation$ts3
> > Alldata_Irrigation$MEts4 =
> > CoefIrrigation_ts4+2*CoefIrrigation_ts4sq*Alldata_Irrigation$ts4
> > Alldata_Irrigation$MEt = Alldata_Irrigation$MEts1 +
> > Alldata_Irrigation$MEts2 + Alldata_Irrigation$MEts3 +
> > Alldata_Irrigation$MEts4
> >
> > Alldata_Irrigation$MEps1 =
> > CoefIrrigation_ps1+2*CoefIrrigation_ps1sq*Alldata_Irrigation$ps1
> > Alldata_Irrigation$MEps2 =
> > CoefIrrigation_ps2+2*CoefIrrigation_ps2sq*Alldata_Irrigation$ps2
> > Alldata_Irrigation$MEps3 =
> > CoefIrrigation_ps3+2*CoefIrrigation_ps3sq*Alldata_Irrigation$ps3
> > Alldata_Irrigation$MEps4 =
> > CoefIrrigation_ps4+2*CoefIrrigation_ps4sq*Alldata_Irrigation$ps4
> > Alldata_Irrigation$MEp = Alldata_Irrigation$MEps1 +
> > Alldata_Irrigation$MEps2 + Alldata_Irrigation$MEps3 +
> > Alldata_Irrigation$MEps4
> >
> >
> >
> Alldata_Irrigation$weight2<-Alldata_Irrigation$sys02*Alldata_Irrigation$se025
> >
> Alldata_Irrigation$weight2<-Alldata_Irrigation$b48+Alldata_Irrigation$b50
> >
> > attach(Alldata_Irrigation)
> > library(stats)
> > MEt_Irrigation<-weighted.mean(MEt,weight2)
> > MEp_Irrigation<-weighted.mean(MEp,weight2)
> >
> > c(MEt_Rainfed,MEp_Rainfed,MEt_Irrigation,MEp_Irrigation)
> >
> > attach(Alldata)
> >
> >
> > # And in the loop (index i):
> >
> > d[i, ] = c(MEt_Rainfed,MEp_Rainfed,MEt_Irrigation,MEp_Irrigation)
> >
> >
> > })
> > out<-as.data.frame(do.call(rbind, o))
> >
> >
> >
> >
> > And the data are:
> >
> > structure(list(LnALVperHA = c(8.09964942932129, 9.53274631500244,
> > 7.42697763442993, 8.25370121002197, 8.42619132995605, 8.0093936920166,
> > 8.09785747528076, 8.49044704437256, 9.08215141296387, 8.38935947418213,
> > 8.67814350128174, 8.38935947418213, 10.4056901931763, 8.48210144042969,
> > 8.30281829833984, 8.92265796661377, 8.33178997039795, 4.54404163360596,
> > 10.662184715271, 9.62167072296143, 7.98790407180786, 7.58244323730469,
> > 7.23262739181519, 9.47037124633789, 8.93403625488281, 7.54256629943848,
> > 9.40302467346191, 10.6290521621704, 8.59830188751221, 8.59585666656494,
> > 9.10000514984131, 9.99381542205811, 9.54681301116943, 9.53055191040039,
> > 8.67971229553223, 7.19780731201172, 8.90067958831787, 6.0509786605835,
> > 6.55788946151733, 8.22567272186279, 9.05618953704834, 6.81858921051025,
> > 8.46410751342773, 7.81292057037354, 8.38989448547363, 10.4709157943726,
> > 8.06132888793945, 8.43629264831543, 10.3087100982666, 10.3218297958374
> > ), ps1 = c(5.14855766296387, 4.71904611587524, 7.9462103843689,
> > 10.6017990112305, 11.233078956604, 9.12952136993408, 12.6536712646484,
> > 11.233078956604, 11.233078956604, 11.233078956604, 11.233078956604,
> > 11.233078956604, 5.93759632110596, 10.6017990112305, 11.233078956604,
> > 10.6017990112305, 7.95780467987061, 9.07744884490967, 4.29865598678589,
> > 8.27481746673584, 3.25137901306152, 4.51061344146729, 6.34518480300903,
> > 6.66202449798584, 6.66202449798584, 4.75249433517456, 6.28858852386475,
> > 6.33270215988159, 10.3600759506226, 10.3600759506226, 18.7164611816406,
> > 5.73318386077881, 7.92949104309082, 9.09823608398438, 11.233078956604,
> > 10.4455404281616, 11.233078956604, 10.4455404281616, 10.4455404281616,
> > 10.6017990112305, 9.19112777709961, 10.4455404281616, 11.233078956604,
> > 11.064302444458, 11.233078956604, 5.93759632110596, 11.233078956604,
> > 10.6017990112305, 6.05948448181152, 9.5645227432251), ps2 =
> c(5.23111915588379,
> > 4.86784505844116, 7.7175760269165, 4.34898376464844, 4.48626232147217,
> > 9.57159423828125, 8.38174915313721, 4.48626232147217, 4.48626232147217,
> > 4.48626232147217, 4.48626232147217, 4.48626232147217, 6.87198734283447,
> > 4.34898376464844, 4.48626232147217, 4.34898376464844, 6.2098217010498,
> > 7.5497522354126, 5.62545442581177, 5.57168531417847, 3.08954334259033,
> > 6.6683931350708, 4.41767883300781, 6.11901044845581, 6.11901044845581,
> > 4.06884765625, 6.35917854309082, 5.7121729850769, 8.55229663848877,
> > 8.55229663848877, 11.8981914520264, 5.49351119995117, 5.34777498245239,
> > 6.12420177459717, 4.48626232147217, 5.2967677116394, 4.48626232147217,
> > 5.2967677116394, 5.2967677116394, 4.34898376464844, 4.51386308670044,
> > 5.2967677116394, 4.48626232147217, 5.98725175857544, 4.48626232147217,
> > 6.87198734283447, 4.48626232147217, 4.34898376464844, 5.58411026000977,
> > 4.42436075210571), ps3 = c(4.95634937286377, 3.50353670120239,
> > 6.01129817962646, 0.851324141025543, 0.816295921802521, 8.03804397583008,
> > 5.56230783462524, 0.816295921802521, 0.816295921802521,
> 0.816295921802521,
> > 0.816295921802521, 0.816295921802521, 6.01666784286499,
> 0.851324141025543,
> > 0.816295921802521, 0.851324141025543, 3.45424580574036, 5.31899690628052,
> > 7.45753812789917, 3.34133338928223, 6.61472988128662, 11.244439125061,
> > 2.19617891311646, 5.29748106002808, 5.29748106002808, 1.63307499885559,
> > 5.51272773742676, 6.78562116622925, 4.5334997177124, 4.5334997177124,
> > 4.31791353225708, 7.10963106155396, 2.32198905944824, 2.74845194816589,
> > 0.816295921802521, 1.47570741176605, 0.816295921802521, 1.47570741176605,
> > 1.47570741176605, 0.851324141025543, 1.39068424701691, 1.47570741176605,
> > 0.816295921802521, 1.85064959526062, 0.816295921802521, 6.01666784286499,
> > 0.816295921802521, 0.851324141025543, 6.78009986877441, 1.21070051193237
> > ), ps4 = c(5.66667366027832, 4.82342433929443, 7.40090322494507,
> > 6.59299898147583, 7.33758926391602, 9.98004341125488, 10.3958940505981,
> > 7.33758926391602, 7.33758926391602, 7.33758926391602, 7.33758926391602,
> > 7.33758926391602, 8.31999015808105, 6.59299898147583, 7.33758926391602,
> > 6.59299898147583, 7.05771064758301, 8.38344383239746, 4.75349426269531,
> > 9.00399303436279, 5.48189449310303, 5.9071044921875, 5.30881881713867,
> > 8.68398857116699, 8.68398857116699, 4.32339859008789, 8.57950687408447,
> > 6.78787326812744, 8.68624305725098, 8.68624305725098, 12.9021902084351,
> > 6.14854049682617, 6.71301507949829, 7.50605535507202, 7.33758926391602,
> > 8.11069011688232, 7.33758926391602, 8.11069011688232, 8.11069011688232,
> > 6.59299898147583, 5.92181205749512, 8.11069011688232, 7.33758926391602,
> > 9.29954528808594, 7.33758926391602, 8.31999015808105, 7.33758926391602,
> > 6.59299898147583, 6.16447877883911, 5.83903217315674), ts1 =
> c(4.19949150085449,
> > 2.46556353569031, 3.96805644035339, 9.05560302734375, 9.5199556350708,
> > 1.18671488761902, 6.60286664962769, 9.5199556350708, 9.5199556350708,
> > 9.5199556350708, 9.5199556350708, 9.5199556350708, 2.12847352027893,
> > 9.05560302734375, 9.5199556350708, 9.05560302734375, 2.11432313919067,
> > 6.49393510818481, -0.165110915899277, 7.78503036499023,
> -7.71160411834717,
> > -0.979450941085815, 4.96369075775146, 4.28496122360229, 4.28496122360229,
> > 6.35976600646973, 3.02656149864197, 2.80754446983337, 5.94739389419556,
> > 5.94739389419556, 8.70161914825439, 1.57025468349457, 5.08782005310059,
> > 4.27688789367676, 9.5199556350708, 8.49832916259766, 9.5199556350708,
> > 8.49832916259766, 8.49832916259766, 9.05560302734375, 6.33359289169312,
> > 8.49832916259766, 9.5199556350708, 7.99740839004517, 9.5199556350708,
> > 2.12847352027893, 9.5199556350708, 9.05560302734375, 2.67069268226624,
> > 7.33829879760742), ts2 = c(9.89923763275146, 10.9084701538086,
> > 9.61682415008545, 13.6253662109375, 13.8121919631958, 6.19518041610718,
> > 9.40560817718506, 13.8121919631958, 13.8121919631958, 13.8121919631958,
> > 13.8121919631958, 13.8121919631958, 10.3912172317505, 13.6253662109375,
> > 13.8121919631958, 13.6253662109375, 9.77112770080566, 11.5460777282715,
> > 8.18180465698242, 12.9412984848022, 2.54625177383423, 8.29829216003418,
> > 10.6650953292847, 10.1770324707031, 10.1770324707031, 12.4333782196045,
> > 8.98324680328369, 8.45312309265137, 9.23384857177734, 9.23384857177734,
> > 11.371600151062, 8.09108352661133, 12.0714511871338, 11.385799407959,
> > 13.8121919631958, 13.912787437439, 13.8121919631958, 13.912787437439,
> > 13.912787437439, 13.6253662109375, 12.0018119812012, 13.912787437439,
> > 13.8121919631958, 14.0190010070801, 13.8121919631958, 10.3912172317505,
> > 13.8121919631958, 13.6253662109375, 8.53981018066406, 12.7294788360596
> > ), ts3 = c(17.718994140625, 21.1172523498535, 17.8669090270996,
> > 23.1215572357178, 22.9536685943604, 15.3891229629517, 15.7000684738159,
> > 22.9536685943604, 22.9536685943604, 22.9536685943604, 22.9536685943604,
> > 22.9536685943604, 20.1229286193848, 23.1215572357178, 22.9536685943604,
> > 23.1215572357178, 19.8251171112061, 19.3250198364258, 16.8351039886475,
> > 22.2966594696045, 14.6743259429932, 17.1554985046387, 20.1656894683838,
> > 20.0012702941895, 20.0012702941895, 23.2738876342773, 18.6255321502686,
> > 16.2553405761719, 16.551155090332, 16.551155090332, 17.6266174316406,
> > 16.1711521148682, 22.280725479126, 21.450382232666, 22.9536685943604,
> > 23.5616970062256, 22.9536685943604, 23.5616970062256, 23.5616970062256,
> > 23.1215572357178, 22.1113948822021, 23.5616970062256, 22.9536685943604,
> > 23.5085678100586, 22.9536685943604, 20.1229286193848, 22.9536685943604,
> > 23.1215572357178, 16.3595314025879, 22.7737102508545), ts4 =
> c(11.661883354187,
> > 12.7669324874878, 11.6320190429688, 17.2357921600342, 17.4911460876465,
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> > 9.23897457122803, 4.3336238861084, 10.9520101547241, 12.9722995758057,
> > 13.9366893768311, 13.1780118942261, 13.9366893768311, 13.1780118942261,
> > 13.1780118942261, 13.8894920349121, 12.7335777282715, 13.1780118942261,
> > 13.9366893768311, 12.315260887146, 13.9366893768311, 11.4818019866943,
> > 13.9366893768311, 13.8894920349121, 6.68424606323242, 14.101095199585
> > ), t_ph_h2o = c(6.07352828979492, 6.72695684432983, 5.60523176193237,
> > 6.13967752456665, 6.86059141159058, 7.40929126739502, 5.68151950836182,
> > 6.86059141159058, 6.86059141159058, 6.86059141159058, 6.86059141159058,
> > 6.86059141159058, 6.51894521713257, 6.13967752456665, 6.86059141159058,
> > 6.13967752456665, 6.98909568786621, 5.5628228187561, 6.68793487548828,
> > 6.57724285125732, 4.67033195495605, 6.32772016525269, 6.4612717628479,
> > 6.73934555053711, 6.73934555053711, 6.80293703079224, 6.17414236068726,
> > 7.03696584701538, 5.93052577972412, 5.93052577972412, 5.43228578567505,
> > 5.5989408493042, 6.86088180541992, 6.68706750869751, 6.86059141159058,
> > 6.00043678283691, 6.86059141159058, 6.00043678283691, 6.00043678283691,
> > 6.13967752456665, 6.89467239379883, 6.00043678283691, 6.86059141159058,
> > 6.81896543502808, 6.86059141159058, 6.51894521713257, 6.86059141159058,
> > 6.13967752456665, 5.63159275054932, 6.13170003890991), t_silt =
> > c(34.2329025268555,
> > 33.4969100952148, 34.4774589538574, 27.8914813995361, 31.9258117675781,
> > 39.6254501342773, 34.7939414978027, 31.9258117675781, 31.9258117675781,
> > 31.9258117675781, 31.9258117675781, 31.9258117675781, 26.6626663208008,
> > 27.8914813995361, 31.9258117675781, 27.8914813995361, 29.7444763183594,
> > 21.3432540893555, 37.4038734436035, 28.1513748168945, 19.4936828613281,
> > 33.5968360900879, 32.8024406433105, 33.313850402832, 33.313850402832,
> > 28.3197917938232, 33.3154563903809, 38.103458404541, 36.0389099121094,
> > 36.0389099121094, 34.9229164123535, 26.5577545166016, 30.9245643615723,
> > 31.1334323883057, 31.9258117675781, 27.1493148803711, 31.9258117675781,
> > 27.1493148803711, 27.1493148803711, 27.8914813995361, 31.3038387298584,
> > 27.1493148803711, 31.9258117675781, 31.6541061401367, 31.9258117675781,
> > 26.6626663208008, 31.9258117675781, 27.8914813995361, 15.6523361206055,
> > 27.803352355957), t_sand = c(47.0063323974609, 37.0355186462402,
> > 45.8286781311035, 36.0810203552246, 39.9931793212891, 39.3664970397949,
> > 46.2948226928711, 39.9931793212891, 39.9931793212891, 39.9931793212891,
> > 39.9931793212891, 39.9931793212891, 49.3508529663086, 36.0810203552246,
> > 39.9931793212891, 36.0810203552246, 39.2436943054199, 65.7813262939453,
> > 35.8039131164551, 51.2884674072266, 66.2952728271484, 46.6789817810059,
> > 41.4505424499512, 44.4590721130371, 44.4590721130371, 48.7276763916016,
> > 43.3654098510742, 33.999683380127, 43.040699005127, 43.040699005127,
> > 43.2519073486328, 59.4827156066895, 43.8675765991211, 41.7124671936035,
> > 39.9931793212891, 34.94921875, 39.9931793212891, 34.94921875,
> > 34.94921875, 36.0810203552246, 39.1853942871094, 34.94921875,
> > 39.9931793212891, 39.8589019775391, 39.9931793212891, 49.3508529663086,
> > 39.9931793212891, 36.0810203552246, 75.7048721313477, 33.5687866210938
> > ), AT = c(0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
> > 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
> > 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0), BE = c(0, 0, 0, 0, 0, 0,
> > 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
> > 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
> > 0, 0), DE = c(0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
> > 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0,
> > 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0), DK = c(0, 0, 0, 0, 0,
> > 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
> > 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
> > 0, 0, 0), ES = c(0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
> > 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 1, 0, 0, 1, 1, 1, 0, 0, 0, 0, 0,
> > 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0), FI = c(0, 0, 0, 0,
> > 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0,
> > 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
> > 0, 0, 0, 0), FR = c(1, 0, 1, 0, 0, 1, 1, 0, 0, 0, 0, 0, 0, 0,
> > 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
> > 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0), GR = c(0, 1, 0,
> > 1, 1, 0, 0, 1, 1, 1, 1, 1, 0, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0,
> > 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
> > 0, 1, 1, 0, 1), IE = c(0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
> > 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
> > 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0), IT = c(0, 0,
> > 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0,
> > 1, 1, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
> > 0, 1, 0, 0, 0, 0), LU = c(0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
> > 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
> > 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0), NL = c(0,
> > 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
> > 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
> > 0, 0, 0, 0, 0, 1, 0), PT = c(0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
> > 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
> > 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0), SE = c(0,
> > 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
> > 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
> > 0, 0, 0, 0, 0, 0, 0), WDE = c(0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
> > 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1,
> > 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0), EDE = c(0,
> > 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
> > 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
> > 0, 0, 0, 0, 0, 0, 0), UK = c(0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
> > 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
> > 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0), CY = c(0,
> > 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
> > 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
> > 0, 0, 0, 0, 0, 0, 0), BG = c(0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
> > 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
> > 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0), CZ = c(0,
> > 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
> > 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
> > 0, 0, 0, 0, 0, 0, 0), EE = c(0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
> > 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
> > 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0), HU = c(0,
> > 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
> > 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
> > 0, 0, 0, 0, 0, 0, 0), LT = c(0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
> > 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
> > 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0), LV = c(0,
> > 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
> > 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
> > 0, 0, 0, 0, 0, 0, 0), PL = c(0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
> > 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
> > 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0), RO = c(0,
> > 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
> > 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
> > 0, 0, 0, 0, 0, 0, 0), SI = c(0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
> > 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
> > 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0), SK = c(0,
> > 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
> > 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
> > 0, 0, 0, 0, 0, 0, 0), b48 = c(70, 2.70000004768372, 63.9000015258789,
> > 5.5, 6.30000019073486, 8.80000019073486, 48.0800018310547,
> 5.09999990463257,
> > 6.40000009536743, 6, 6.69999980926514, 4, 6.30000019073486,
> 5.80000019073486,
> > 8.80000019073486, 2, 13, 0.5, 10.25, 34, 65.2300033569336,
> 37.7799987792969,
> > 74.9400024414062, 31.0200004577637, 20.0300006866455, 70.7200012207031,
> > 40, 4.90000009536743, 13.5, 5, 26.8700008392334, 3, 2, 3.09999990463257,
> > 6.80000019073486, 15.6999998092651, 9.19999980926514, 5.30000019073486,
> > 4.59999990463257, 17.3999996185303, 7, 4.90000009536743,
> 13.3999996185303,
> > 2.34999990463257, 8.5, 24.8700008392334, 4, 1.39999997615814,
> > 34.7799987792969, 6.69999980926514), b50 = c(0, 0, 0, 0, 0, 0,
> > 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 34.2400016784668, 0, 0, 0, 0,
> > 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
> > 0, 0, 0, 0, 0, 0, 0), irrigation = c(0, 100, 0, 5.45454584062099,
> > 7.9365074634552, 89.3392562866211, 0, 17.6470592617989, 0, 0,
> > 65.5172407627106, 0, 61.904764175415, 34.4827562570572, 7.95454531908035,
> > 75, 0, 0, 0, 0, 0, 0, 5.26393800973892, 0, 0, 0, 0, 0, 0, 0,
> > 0, 0, 74.6153831481934, 84.6153914928436, 0, 5.09554147720337,
> > 0, 0, 0, 21.0884347558022, 18.4549376368523, 6.1224490404129,
> > 25.3731369972229, 2.12765969336033, 0, 84.3988716602325, 0, 0,
> > 0, 100), awc_class = c(106.228088378906, 78.2306137084961,
> 80.9311141967773,
> > 32.4921531677246, 54.8475151062012, 80.6665878295898, 116.331588745117,
> > 54.8475151062012, 54.8475151062012, 54.8475151062012, 54.8475151062012,
> > 54.8475151062012, 56.3101806640625, 32.4921531677246, 54.8475151062012,
> > 32.4921531677246, 59.3034172058105, 101.193893432617, 96.5840377807617,
> > 54.2786560058594, 87.1388244628906, 66.1907730102539, 57.205738067627,
> > 55.4114303588867, 55.4114303588867, 80.9288787841797, 63.6008758544922,
> > 150, 30.3404140472412, 30.3404140472412, 19.8318557739258,
> 104.236854553223,
> > 79.2445755004883, 57.0045547485352, 54.8475151062012, 34.320426940918,
> > 54.8475151062012, 34.320426940918, 34.320426940918, 32.4921531677246,
> > 65.1337509155273, 34.320426940918, 54.8475151062012, 73.6748657226562,
> > 54.8475151062012, 56.3101806640625, 54.8475151062012, 32.4921531677246,
> > 127.726959228516, 27.9528160095215), sys02 = c(18.8571434020996,
> > 303.529418945312, 30.2469139099121, 104.305557250977, 86.4935073852539,
> > 51.25, 83.0927810668945, 453.118286132812, 42.5, 104.305557250977,
> > 48.461540222168, 86.4935073852539, 55.1851844787598, 104.305557250977,
> > 104.305557250977, 185.277770996094, 17.9775276184082, 25.2777786254883,
> > 64, 21.6666660308838, 30, 24.2372875213623, 47.0285720825195,
> > 16.1904754638672, 33.75, 22.5423736572266, 10.2857141494751,
> > 39.230770111084, 6.06741571426392, 1, 28.3255805969238, 21.6000003814697,
> > 69.2592620849609, 86.6666641235352, 48.5185203552246, 44.4186058044434,
> > 48.6538467407227, 437.105255126953, 437.105255126953, 19.1666660308838,
> > 48.461540222168, 437.105255126953, 48.6538467407227, 453.118286132812,
> > 48.6538467407227, 14.2857141494751, 453.118286132812, 453.118286132812,
> > 95.2380981445312, 63), se025 = c(163.529998779297, 2.70000004768372,
> > 157, 5.5, 6.30000019073486, 36.0200004577637, 86, 5.09999990463257,
> > 6.40000009536743, 6, 8.69999980926514, 4, 6.30000019073486,
> 5.80000019073486,
> > 8.80000019073486, 2, 118.809997558594, 44.1100006103516,
> 16.7000007629395,
> > 34, 73.4000015258789, 73.0800018310547, 134.880004882812,
> 31.0200004577637,
> > 20.0300006866455, 94.7200012207031, 40, 5.5, 16.5, 15, 26.8700008392334,
> > 59.4199981689453, 13, 5.19999980926514, 6.80000019073486,
> 15.6999998092651,
> > 10.8999996185303, 5.30000019073486, 4.59999990463257, 29.3999996185303,
> > 23.2999992370605, 4.90000009536743, 13.3999996185303, 2.34999990463257,
> > 8.5, 24.8700008392334, 4.19999980926514, 1.39999997615814,
> 34.7799987792969,
> > 6.69999980926514)), .Names = c("LnALVperHA", "ps1", "ps2", "ps3",
> > "ps4", "ts1", "ts2", "ts3", "ts4", "ps1sq", "ps2sq", "ps3sq",
> > "ps4sq", "ts1sq", "ts2sq", "ts3sq", "ts4sq", "pdnsty", "portsML",
> > "cities500k", "rentedland", "subsidies1", "elevmean", "elevrange",
> > "t_gravel", "t_ph_h2o", "t_silt", "t_sand", "AT", "BE", "DE",
> > "DK", "ES", "FI", "FR", "GR", "IE", "IT", "LU", "NL", "PT", "SE",
> > "WDE", "EDE", "UK", "CY", "BG", "CZ", "EE", "HU", "LT", "LV",
> > "PL", "RO", "SI", "SK", "b48", "b50", "irrigation", "awc_class",
> > "sys02", "se025"), row.names = c("2", "3", "4", "5", "6", "7",
> > "8", "11", "12", "13", "14", "15", "16", "17", "18", "19", "20",
> > "21", "22", "23", "24", "25", "26", "27", "28", "29", "30", "31",
> > "32", "33", "34", "35", "36", "37", "38", "39", "40", "41", "42",
> > "43", "44", "45", "46", "47", "48", "49", "50", "51", "52", "53"
> > ), class = "data.frame")
> >
> >
> >
> >
> >
> >
> >
> >
> >
> >
> >
> >
> >
> >
> >
> >
> >
> >
> >
> >
> >
> >
> >
> >
> >
> >
> >
> > 2015-08-14 14:58 GMT+02:00 PIKAL Petr <petr.pikal at precheza.cz>:
> >>
> >> Hi Janka
> >>
> >>
> >>
> >> Sorry, but we are limited in connecting to web services so I am not
> able to restore your data and see your code. Result of dput(somedata)
> coppied to email is preferable for sharing data and code can be copied to
> email too. But do not use HTML as it usually scrambles text.
> >>
> >>
> >>
> >> Answer in line
> >>
> >>
> >>
> >> From: Janka Vanschoenwinkel [mailto:janka.vanschoenwinkel at uhasselt.be]
> >> Sent: Friday, August 14, 2015 2:17 PM
> >> To: Thierry Onkelinx; PIKAL Petr
> >> Cc: r-help at r-project.org
> >> Subject: Re: [R] cut variable within a loop
> >>
> >>
> >>
> >> Hi Thierry and Petr,
> >>
> >>
> >>
> >> I really appreciate the comments you already gave. Thank you very much
> for that.
> >>
> >>
> >>
> >> Below you can find a link to the data and the code. Hopefully this
> helps in spotting the error.
> >>
> >>
> >>
> >> I still think the issue is that the cut2 function only accepts numbers,
> and not an "i" that refers to the number at the start of the loop. To
> answer Petr his question, yes, column 3 and 4 are NA (these are the columns
> of the second interval). But I don't really understand your point so could
> you clarify this please?
> >>
> >>
> >>
> >> If you use NA as a number of intervals you will get such errors
> >>
> >>
> >>
> >> k<-c(2,4,NA,5)
> >>
> >> ii<-vector(4, mode="list")
> >>
> >> for (i in 1:4) {
> >>
> >> ii[[i]] <- cut2(iris[,i], k[i])
> >>
> >> }
> >>
> >> Error in if (r[1] < cuts[1]) cuts <- c(r[1], cuts) :
> >>
> >> missing value where TRUE/FALSE needed
> >>
> >> for (i in 1:4) {
> >>
> >> ii[[i]] <- cut(iris[,i], k[i])
> >>
> >> }
> >>
> >> Error in cut.default(iris[, i], k[i]) : invalid number of intervals
> >>
> >>
> >>
> >> If you remove NA from k definition error is gone.
> >>
> >> k<-c(2,4,3,5)
> >>
> >> ii<-vector(4, mode="list")
> >>
> >>
> >>
> >> for (i in 1:4) {
> >>
> >> ii[[i]] <- cut(iris[,i], k[i])
> >>
> >> }
> >>
> >>
> >>
> >> You can try it yourself. The error is not related to cycle; whenever
> number of intervals in cut call is NA you always get an error.
> >>
> >>
> >>
> >> Cheers
> >>
> >> Petr
> >>
> >>
> >>
> >>
> https://drive.google.com/folderview?id=0By9u5m3kxn9yfkxxeVNMdnRQQXhoT05CRlJlZVBCWWF2NURMMTNmVFVFeXJXXzhlMWE4SUk&usp=sharing
> >>
> >>
> >>
> >> Thank you very much once again!
> >>
> >>
> >>
> >> Janka
> >>
> >>
> >>
> >>
> >>
> >>
> >>
> >> 2015-08-11 15:10 GMT+02:00 Thierry Onkelinx <thierry.onkelinx at inbo.be>:
> >>
> >> You'll need to send a reproducible example of the code. We can't run
> the code that you send. Hence it is hard to help you. See e.g.
> http://adv-r.had.co.nz/Reproducibility.html
> >>
> >>
> >> ir. Thierry Onkelinx
> >> Instituut voor natuur- en bosonderzoek / Research Institute for Nature
> and Forest
> >> team Biometrie & Kwaliteitszorg / team Biometrics & Quality Assurance
> >> Kliniekstraat 25
> >> 1070 Anderlecht
> >> Belgium
> >>
> >> To call in the statistician after the experiment is done may be no more
> than asking him to perform a post-mortem examination: he may be able to say
> what the experiment died of. ~ Sir Ronald Aylmer Fisher
> >> The plural of anecdote is not data. ~ Roger Brinner
> >> The combination of some data and an aching desire for an answer does
> not ensure that a reasonable answer can be extracted from a given body of
> data. ~ John Tukey
> >>
> >>
> >>
> >> 2015-08-11 14:57 GMT+02:00 Janka Vanschoenwinkel <
> janka.vanschoenwinkel at uhasselt.be>:
> >>
> >> Hi Thierry!
> >>
> >>
> >>
> >> Thanks for your answer. I tried this, but I get this error:
> >>
> >>
> >>
> >> "Error in cut.default(x, k2) : invalid number of intervals"
> >>
> >>
> >>
> >> Which is strange because I am not specifying intervals, but the number
> at where the sample has to be cut?
> >>
> >>
> >>
> >> Greetings from Belgium! :-)
> >>
> >>
> >>
> >> 2015-08-11 14:52 GMT+02:00 Thierry Onkelinx <thierry.onkelinx at inbo.be>:
> >>
> >> Dear Janka,
> >>
> >>
> >>
> >> You loop goes for 0 to 100. It should probably go from 1:99
> >>
> >>
> >>
> >> Best regards,
> >>
> >>
> >> ir. Thierry Onkelinx
> >> Instituut voor natuur- en bosonderzoek / Research Institute for Nature
> and Forest
> >> team Biometrie & Kwaliteitszorg / team Biometrics & Quality Assurance
> >> Kliniekstraat 25
> >> 1070 Anderlecht
> >> Belgium
> >>
> >> To call in the statistician after the experiment is done may be no more
> than asking him to perform a post-mortem examination: he may be able to say
> what the experiment died of. ~ Sir Ronald Aylmer Fisher
> >> The plural of anecdote is not data. ~ Roger Brinner
> >> The combination of some data and an aching desire for an answer does
> not ensure that a reasonable answer can be extracted from a given body of
> data. ~ John Tukey
> >>
> >>
> >>
> >> 2015-08-11 14:38 GMT+02:00 Janka Vanschoenwinkel <
> janka.vanschoenwinkel at uhasselt.be>:
> >>
> >> Dear list members,
> >>
> >> I have a loop where I want to do several calculations for different
> samples
> >> and save the results for each sample. These samples are for each loop
> >> different. I want to use the "i" in the loop to cut the samples.
> >>
> >> So for instance:
> >>
> >> - In loop 1 (i=1), I have a sample from 0-1 and a sample from 1-100.
> >> - In loop 2 (i=2), I have a sample from 0-2 and a sample from 2-100.
> >> - In loop 99 (i=99), I have a sample from 0-99 and a sample from
> 99-100.
> >>
> >> I built the following function, but there is *a problem with the cut2
> >> function* since it doesn't recognize the "i". Outside the lapply loop it
> >> works, but not inside the loop.
> >>
> >> Could somebody please help me with this problem? Thanks a lot!
> >>
> >>
> >>
> d=data.frame(MEt_Rainfed=rep(0,100),MEp_Rainfed=rep(0,100),MEt_Irrigation=rep(0,100),MEp_Irrigation=rep(0,100))
> >>
> >>
> >>
> >> o<-lapply(0:100, function(i){
> >>
> >>
> >>
> >> Alldata$irri=cut2(Alldata$irrigation,i)
> >>
> >> levels(Alldata$irri)<-c("0","1")
> >>
> >>
> >>
> >> Alldata_Rainfed<-subset(Alldata, irri == 0)
> >>
> >> Alldata_Irrigation<-subset(Alldata, irri == 1)
> >>
> >>
> >>
> >> #calculations per sample, then store all the values per i and per
> >> variable in a dataframe: (the calculations are not shown in this
> example)
> >>
> >>
> >>
> >> d[i, ] = c(MEt_Rainfed,MEp_Rainfed,MEt_Irrigation,MEp_Irrigation)
> >>
> >>
> >>
> >> })
> >>
> >>
> >>
> >> out<-as.data.frame(do.call(rbind, o))
> >>
> >>
> >> --
> >> P Please consider the environment before printing this e-mail
> >>
> >> [[alternative HTML version deleted]]
> >>
> >> ______________________________________________
> >> R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see
> >> https://stat.ethz.ch/mailman/listinfo/r-help
> >> PLEASE do read the posting guide
> http://www.R-project.org/posting-guide.html
> >> and provide commented, minimal, self-contained, reproducible code.
> >>
> >>
> >>
> >>
> >>
> >>
> >>
> >> --
> >>
> >>
> >>
> >> Mevrouw Janka Vanschoenwinkel
> >> Doctoraatsbursaal - PhD
> >> Milieueconomie - Environmental economics
> >>
> >> T +32(0)11 26 87 42 | GSM +32(0)476 28 21 40
> >>
> >> www.uhasselt.be/eec
> >>
> >> Universiteit Hasselt | Campus Diepenbeek
> >> Agoralaan Gebouw D | B-3590 Diepenbeek
> >> Kantoor F11
> >>
> >> Postadres: Universiteit Hasselt | Martelarenlaan 42 | B-3500 Hasselt
> >>
> >> P Please consider the environment before printing this e-mail
> >>
> >>
> >>
> >>
> >>
> >>
> >>
> >>
> >>
> >> --
> >>
> >>
> >>
> >> Mevrouw Janka Vanschoenwinkel
> >> Doctoraatsbursaal - PhD
> >> Milieueconomie - Environmental economics
> >>
> >> T +32(0)11 26 87 42 | GSM +32(0)476 28 21 40
> >>
> >> www.uhasselt.be/eec
> >>
> >> Universiteit Hasselt | Campus Diepenbeek
> >> Agoralaan Gebouw D | B-3590 Diepenbeek
> >> Kantoor F11
> >>
> >> Postadres: Universiteit Hasselt | Martelarenlaan 42 | B-3500 Hasselt
> >>
> >> P Please consider the environment before printing this e-mail
> >>
> >>
> >>
> >>
> >> ________________________________
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> >
> >
> >
> > --
> >
> > Mevrouw Janka Vanschoenwinkel
> > Doctoraatsbursaal - PhD
> > Milieueconomie - Environmental economics
> >
> > T +32(0)11 26 87 42 | GSM +32(0)476 28 21 40
> >
> > www.uhasselt.be/eec
> >
> > Universiteit Hasselt | Campus Diepenbeek
> > Agoralaan Gebouw D | B-3590 Diepenbeek
> > Kantoor F11
> >
> > Postadres: Universiteit Hasselt | Martelarenlaan 42 | B-3500 Hasselt
> >
> > P Please consider the environment before printing this e-mail
> >
> > ______________________________________________
> > R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see
> > https://stat.ethz.ch/mailman/listinfo/r-help
> > PLEASE do read the posting guide
> http://www.R-project.org/posting-guide.html
> > and provide commented, minimal, self-contained, reproducible code.
>
> David Winsemius
> Alameda, CA, USA
>
>
--
[image: Logo UHasselt]Mevrouw Janka Vanschoenwinkel
*Doctoraatsbursaal - PhD *
Milieueconomie - Environmental economics
T +32(0)11 26 87 42 | GSM +32(0)476 28 21 40
www.uhasselt.be/eec
Universiteit Hasselt | Campus Diepenbeek
Agoralaan Gebouw D | B-3590 Diepenbeek
Kantoor F11
Postadres: Universiteit Hasselt | Martelarenlaan 42 | B-3500 Hasselt
P Please consider the environment before printing this e-mail
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