[R] Can't install rgl: installed package can't be loaded; 'memory not mapped'
Duncan Murdoch
murdoch.duncan at gmail.com
Sat Aug 8 23:54:09 CEST 2015
On 08/08/2015 5:19 PM, Waichler, Scott R wrote:
>>> Hi, I can't install package rgl. The last lines from the install process talking
>> about the error are:
>>
>> I'd guess you have an OpenGL problem. Does glxgears run?
>
> Yes, it does. I wasn't aware of the program before you mentioned it, but a display opens with 3 gears and here is some output:
> [root at hokulea R-3.2.1_install]# glxgears -info
> GL_RENDERER = Mesa GLX Indirect
> GL_VERSION = 1.2 (1.5 Mesa 6.5.1)
> GL_VENDOR = Mesa project: www.mesa3d.org
> GL_EXTENSIONS = GL_ARB_depth_texture GL_ARB_imaging GL_ARB_multitexture GL_ARB_point_parameters GL_ARB_point_sprite GL_ARB_shadow GL_ARB_texture_border_clamp GL_ARB_texture_cube_map GL_ARB_texture_env_add GL_ARB_texture_env_combine GL_ARB_texture_env_crossbar GL_ARB_texture_env_dot3 GL_ARB_texture_mirrored_repeat GL_ARB_texture_non_power_of_two GL_ARB_window_pos GL_EXT_abgr GL_EXT_bgra GL_EXT_blend_color GL_EXT_blend_func_separate GL_EXT_blend_minmax GL_EXT_blend_subtract GL_EXT_draw_range_elements GL_EXT_framebuffer_object GL_EXT_fog_coord GL_EXT_multi_draw_arrays GL_EXT_packed_pixels GL_EXT_rescale_normal GL_EXT_secondary_color GL_EXT_separate_specular_color GL_EXT_shadow_funcs GL_EXT_stencil_wrap GL_EXT_texture3D GL_EXT_texture_edge_clamp GL_EXT_texture_env_add GL_EXT_texture_env_combine GL_EXT_texture_env_dot3 GL_EXT_texture_lod_bias GL_EXT_texture_object GL_EXT_vertex_array GL_ATI_texture_mirror_once GL_IBM_texture_mirrored_repeat GL_NV_blend_square GL_NV_texture_rectangle GL_N
V_texgen_reflection GL_SGIS_generate_mipmap GL_SGIS_texture_lod GL_SGIX_depth_texture GL_SGIX_shadow
> 24839 frames in 6.0 seconds = 4153.389 FPS
> 7152 frames in 6.0 seconds = 1192.594 FPS
> . . .
>
So it looks as though OpenGL is working. I really have no idea what is
causing the error you're seeing. rgl works for me, but I don't have a
64 bit Linux to try it on. (It does work in 32 bit Ubuntu.)
Duncan Murdoch
>
>
>>> ** testing if installed package can be loaded
>>> sh: line 1: 11949 Segmentation fault '/files3/R/R-
>> 3.2.1_install/lib64/R/bin/R' --no-save --slave 2>&1 <
>> '/tmp/RtmpQCpp6N/file2b115f4f8e1d'
>>>
>>> *** caught segfault ***
>>> address (nil), cause 'memory not mapped'
>>> aborting ...
>>> ERROR: loading failed
>>>
>>> I realize this is probably not an R problem, but a Google search turns up
>> nothing that helps, and I'm hoping someone here can help anyway. Below
>> are my sessionInfo() output and the contents of the first file generated with
>> "R CMD check rgl_0.95.1247.tar.gz".
>>>
>>>> sessionInfo()
>>> R version 3.2.1 (2015-06-18)
>>> Platform: x86_64-unknown-linux-gnu (64-bit)
>>>
>>> locale:
>>> [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
>>> [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
>>> [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
>>> [7] LC_PAPER=en_US.UTF-8 LC_NAME=C
>>> [9] LC_ADDRESS=C LC_TELEPHONE=C
>>> [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
>>>
>>> attached base packages:
>>> [1] stats graphics grDevices utils datasets methods base
>>>
>>> loaded via a namespace (and not attached):
>>> [1] tools_3.2.1
>>>
>>>
>>> # R CMD check rgl_0.95.1247.tar.gz
>>> * installing *source* package 'rgl' ...
>>> ** package 'rgl' successfully unpacked and MD5 sums checked checking
>>> for gcc... gcc -std=gnu99 checking whether the C compiler works... yes
>>> checking for C compiler default output file name... a.out checking for
>>> suffix of executables...
>>> checking whether we are cross compiling... no checking for suffix of
>>> object files... o checking whether we are using the GNU C compiler...
>>> yes checking whether gcc -std=gnu99 accepts -g... yes checking for gcc
>>> -std=gnu99 option to accept ISO C89... none needed checking how to run
>>> the C preprocessor... gcc -std=gnu99 -E checking for gcc... (cached)
>>> gcc -std=gnu99 checking whether we are using the GNU C compiler...
>>> (cached) yes checking whether gcc -std=gnu99 accepts -g... (cached)
>>> yes checking for gcc -std=gnu99 option to accept ISO C89... (cached)
>>> none needed checking whether __attribute__((visibility())) is
>>> supported... yes checking whether gcc -std=gnu99 accepts
>>> -fvisibility... yes checking whether accepts -fvisibility... no
>>> checking for libpng-config... yes
>>> configure: using libpng-config
>>> configure: using libpng dynamic linkage checking for X... libraries ,
>>> headers checking GL/gl.h usability... yes checking GL/gl.h presence...
>>> yes checking for GL/gl.h... yes checking GL/glu.h usability... yes
>>> checking GL/glu.h presence... yes checking for GL/glu.h... yes
>>> checking for glEnd in -lGL... yes checking for gluProject in -lGLU...
>>> yes checking for freetype-config... yes
>>> configure: using Freetype and FTGL
>>> configure: creating ./config.status
>>> config.status: creating src/Makevars
>>> ** libs
>>> g++ -I/files3/R/R-3.2.1_install/lib64/R/include -DNDEBUG -DHAVE_PNG_H -
>> I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -
>> I/usr/include/freetype2 -Iext -I/usr/local/include -g -O2 -fvisibility=hidden
>> -fpic -g -O2 -c ABCLineSet.cpp -o ABCLineSet.o
>>> g++ -I/files3/R/R-3.2.1_install/lib64/R/include -DNDEBUG -DHAVE_PNG_H -
>> I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -
>> I/usr/include/freetype2 -Iext -I/usr/local/include -g -O2 -fvisibility=hidden
>> -fpic -g -O2 -c BBoxDeco.cpp -o BBoxDeco.o
>>> BBoxDeco.cpp: In member function 'int rgl::AxisInfo::getNticks(float,
>> float)':
>>> BBoxDeco.cpp:239: warning: converting to 'int' from 'float'
>>> g++ -I/files3/R/R-3.2.1_install/lib64/R/include -DNDEBUG -DHAVE_PNG_H -
>> I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -
>> I/usr/include/freetype2 -Iext -I/usr/local/include -g -O2 -fvisibility=hidden
>> -fpic -g -O2 -c Background.cpp -o Background.o
>>> g++ -I/files3/R/R-3.2.1_install/lib64/R/include -DNDEBUG -DHAVE_PNG_H -
>> I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -
>> I/usr/include/freetype2 -Iext -I/usr/local/include -g -O2 -fvisibility=hidden
>> -fpic -g -O2 -c ClipPlane.cpp -o ClipPlane.o
>>> g++ -I/files3/R/R-3.2.1_install/lib64/R/include -DNDEBUG -DHAVE_PNG_H -
>> I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -
>> I/usr/include/freetype2 -Iext -I/usr/local/include -g -O2 -fvisibility=hidden
>> -fpic -g -O2 -c Color.cpp -o Color.o
>>> g++ -I/files3/R/R-3.2.1_install/lib64/R/include -DNDEBUG -DHAVE_PNG_H -
>> I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -
>> I/usr/include/freetype2 -Iext -I/usr/local/include -g -O2 -fvisibility=hidden
>> -fpic -g -O2 -c Disposable.cpp -o Disposable.o
>>> g++ -I/files3/R/R-3.2.1_install/lib64/R/include -DNDEBUG -DHAVE_PNG_H -
>> I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -
>> I/usr/include/freetype2 -Iext -I/usr/local/include -g -O2 -fvisibility=hidden
>> -fpic -g -O2 -c Light.cpp -o Light.o
>>> g++ -I/files3/R/R-3.2.1_install/lib64/R/include -DNDEBUG -DHAVE_PNG_H -
>> I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -
>> I/usr/include/freetype2 -Iext -I/usr/local/include -g -O2 -fvisibility=hidden
>> -fpic -g -O2 -c LineSet.cpp -o LineSet.o
>>> g++ -I/files3/R/R-3.2.1_install/lib64/R/include -DNDEBUG -DHAVE_PNG_H -
>> I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -
>> I/usr/include/freetype2 -Iext -I/usr/local/include -g -O2 -fvisibility=hidden
>> -fpic -g -O2 -c LineStripSet.cpp -o LineStripSet.o
>>> g++ -I/files3/R/R-3.2.1_install/lib64/R/include -DNDEBUG -DHAVE_PNG_H -
>> I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -
>> I/usr/include/freetype2 -Iext -I/usr/local/include -g -O2 -fvisibility=hidden
>> -fpic -g -O2 -c Material.cpp -o Material.o
>>> g++ -I/files3/R/R-3.2.1_install/lib64/R/include -DNDEBUG -DHAVE_PNG_H -
>> I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -
>> I/usr/include/freetype2 -Iext -I/usr/local/include -g -O2 -fvisibility=hidden
>> -fpic -g -O2 -c NULLgui.cpp -o NULLgui.o
>>> g++ -I/files3/R/R-3.2.1_install/lib64/R/include -DNDEBUG -DHAVE_PNG_H -
>> I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -
>> I/usr/include/freetype2 -Iext -I/usr/local/include -g -O2 -fvisibility=hidden
>> -fpic -g -O2 -c PlaneSet.cpp -o PlaneSet.o
>>> g++ -I/files3/R/R-3.2.1_install/lib64/R/include -DNDEBUG -DHAVE_PNG_H -
>> I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -
>> I/usr/include/freetype2 -Iext -I/usr/local/include -g -O2 -fvisibility=hidden
>> -fpic -g -O2 -c PointSet.cpp -o PointSet.o
>>> g++ -I/files3/R/R-3.2.1_install/lib64/R/include -DNDEBUG -DHAVE_PNG_H -
>> I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -
>> I/usr/include/freetype2 -Iext -I/usr/local/include -g -O2 -fvisibility=hidden
>> -fpic -g -O2 -c PrimitiveSet.cpp -o PrimitiveSet.o
>>> g++ -I/files3/R/R-3.2.1_install/lib64/R/include -DNDEBUG -DHAVE_PNG_H -
>> I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -
>> I/usr/include/freetype2 -Iext -I/usr/local/include -g -O2 -fvisibility=hidden
>> -fpic -g -O2 -c RenderContext.cpp -o RenderContext.o
>>> g++ -I/files3/R/R-3.2.1_install/lib64/R/include -DNDEBUG -DHAVE_PNG_H -
>> I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -
>> I/usr/include/freetype2 -Iext -I/usr/local/include -g -O2 -fvisibility=hidden
>> -fpic -g -O2 -c Shape.cpp -o Shape.o
>>> g++ -I/files3/R/R-3.2.1_install/lib64/R/include -DNDEBUG -DHAVE_PNG_H -
>> I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -
>> I/usr/include/freetype2 -Iext -I/usr/local/include -g -O2 -fvisibility=hidden
>> -fpic -g -O2 -c SphereMesh.cpp -o SphereMesh.o
>>> g++ -I/files3/R/R-3.2.1_install/lib64/R/include -DNDEBUG -DHAVE_PNG_H -
>> I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -
>> I/usr/include/freetype2 -Iext -I/usr/local/include -g -O2 -fvisibility=hidden
>> -fpic -g -O2 -c SphereSet.cpp -o SphereSet.o
>>> g++ -I/files3/R/R-3.2.1_install/lib64/R/include -DNDEBUG -DHAVE_PNG_H -
>> I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -
>> I/usr/include/freetype2 -Iext -I/usr/local/include -g -O2 -fvisibility=hidden
>> -fpic -g -O2 -c SpriteSet.cpp -o SpriteSet.o
>>> g++ -I/files3/R/R-3.2.1_install/lib64/R/include -DNDEBUG -DHAVE_PNG_H -
>> I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -
>> I/usr/include/freetype2 -Iext -I/usr/local/include -g -O2 -fvisibility=hidden
>> -fpic -g -O2 -c String.cpp -o String.o
>>> g++ -I/files3/R/R-3.2.1_install/lib64/R/include -DNDEBUG -DHAVE_PNG_H -
>> I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -
>> I/usr/include/freetype2 -Iext -I/usr/local/include -g -O2 -fvisibility=hidden
>> -fpic -g -O2 -c Surface.cpp -o Surface.o
>>> g++ -I/files3/R/R-3.2.1_install/lib64/R/include -DNDEBUG -DHAVE_PNG_H -
>> I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -
>> I/usr/include/freetype2 -Iext -I/usr/local/include -g -O2 -fvisibility=hidden
>> -fpic -g -O2 -c TextSet.cpp -o TextSet.o
>>> g++ -I/files3/R/R-3.2.1_install/lib64/R/include -DNDEBUG -DHAVE_PNG_H -
>> I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -
>> I/usr/include/freetype2 -Iext -I/usr/local/include -g -O2 -fvisibility=hidden
>> -fpic -g -O2 -c Texture.cpp -o Texture.o
>>> g++ -I/files3/R/R-3.2.1_install/lib64/R/include -DNDEBUG -DHAVE_PNG_H -
>> I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -
>> I/usr/include/freetype2 -Iext -I/usr/local/include -g -O2 -fvisibility=hidden
>> -fpic -g -O2 -c Viewpoint.cpp -o Viewpoint.o
>>> g++ -I/files3/R/R-3.2.1_install/lib64/R/include -DNDEBUG -DHAVE_PNG_H -
>> I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -
>> I/usr/include/freetype2 -Iext -I/usr/local/include -g -O2 -fvisibility=hidden
>> -fpic -g -O2 -c api.cpp -o api.o
>>> g++ -I/files3/R/R-3.2.1_install/lib64/R/include -DNDEBUG -DHAVE_PNG_H -
>> I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -
>> I/usr/include/freetype2 -Iext -I/usr/local/include -g -O2 -fvisibility=hidden
>> -fpic -g -O2 -c assert.cpp -o assert.o
>>> g++ -I/files3/R/R-3.2.1_install/lib64/R/include -DNDEBUG -DHAVE_PNG_H -
>> I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -
>> I/usr/include/freetype2 -Iext -I/usr/local/include -g -O2 -fvisibility=hidden
>> -fpic -g -O2 -c callbacks.cpp -o callbacks.o
>>> g++ -I/files3/R/R-3.2.1_install/lib64/R/include -DNDEBUG -DHAVE_PNG_H -
>> I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -
>> I/usr/include/freetype2 -Iext -I/usr/local/include -g -O2 -fvisibility=hidden
>> -fpic -g -O2 -c device.cpp -o device.o
>>> g++ -I/files3/R/R-3.2.1_install/lib64/R/include -DNDEBUG -DHAVE_PNG_H -
>> I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -
>> I/usr/include/freetype2 -Iext -I/usr/local/include -g -O2 -fvisibility=hidden
>> -fpic -g -O2 -c devicemanager.cpp -o devicemanager.o
>>> g++ -I/files3/R/R-3.2.1_install/lib64/R/include -DNDEBUG -DHAVE_PNG_H -
>> I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -
>> I/usr/include/freetype2 -Iext -I/usr/local/include -g -O2 -fvisibility=hidden
>> -fpic -g -O2 -c fps.cpp -o fps.o
>>> g++ -I/files3/R/R-3.2.1_install/lib64/R/include -DNDEBUG -DHAVE_PNG_H -
>> I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -
>> I/usr/include/freetype2 -Iext -I/usr/local/include -g -O2 -fvisibility=hidden
>> -fpic -g -O2 -c ftgl.cpp -o ftgl.o
>>> g++ -I/files3/R/R-3.2.1_install/lib64/R/include -DNDEBUG -DHAVE_PNG_H -
>> I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -
>> I/usr/include/freetype2 -Iext -I/usr/local/include -g -O2 -fvisibility=hidden
>> -fpic -g -O2 -c geom.cpp -o geom.o
>>> gcc -std=gnu99 -I/files3/R/R-3.2.1_install/lib64/R/include -DNDEBUG -
>> DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -
>> I/usr/include/freetype2 -Iext -I/usr/local/include -fvisibility=hidden -fpic -
>> g -O2 -c gl2ps.c -o gl2ps.o
>>> g++ -I/files3/R/R-3.2.1_install/lib64/R/include -DNDEBUG -DHAVE_PNG_H -
>> I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -
>> I/usr/include/freetype2 -Iext -I/usr/local/include -g -O2 -fvisibility=hidden
>> -fpic -g -O2 -c glErrors.cpp -o glErrors.o
>>> g++ -I/files3/R/R-3.2.1_install/lib64/R/include -DNDEBUG -DHAVE_PNG_H -
>> I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -
>> I/usr/include/freetype2 -Iext -I/usr/local/include -g -O2 -fvisibility=hidden
>> -fpic -g -O2 -c glgui.cpp -o glgui.o
>>> glgui.cpp: In member function 'virtual void rgl::GLBitmapFont::draw(const
>> char*, int, double, double, const rgl::RenderContext&)':
>>> glgui.cpp:115: warning: passing 'double' for argument 3 to 'GLint
>> gl2psTextOpt(const char*, const char*, GLshort, GLint, GLfloat)'
>>> glgui.cpp: In constructor 'rgl::GLFTFont::GLFTFont(const char*, int, double,
>> const char*)':
>>> glgui.cpp:144: warning: converting to 'unsigned int' from 'double'
>>> glgui.cpp: In member function 'virtual void rgl::GLFTFont::draw(const
>> char*, int, double, double, const rgl::RenderContext&)':
>>> glgui.cpp:182: warning: passing 'double' for argument 3 to 'GLint
>> gl2psTextOpt(const char*, const char*, GLshort, GLint, GLfloat)'
>>> g++ -I/files3/R/R-3.2.1_install/lib64/R/include -DNDEBUG -DHAVE_PNG_H -
>> I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -
>> I/usr/include/freetype2 -Iext -I/usr/local/include -g -O2 -fvisibility=hidden
>> -fpic -g -O2 -c gui.cpp -o gui.o
>>> g++ -I/files3/R/R-3.2.1_install/lib64/R/include -DNDEBUG -DHAVE_PNG_H -
>> I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -
>> I/usr/include/freetype2 -Iext -I/usr/local/include -g -O2 -fvisibility=hidden
>> -fpic -g -O2 -c init.cpp -o init.o
>>> g++ -I/files3/R/R-3.2.1_install/lib64/R/include -DNDEBUG -DHAVE_PNG_H -
>> I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -
>> I/usr/include/freetype2 -Iext -I/usr/local/include -g -O2 -fvisibility=hidden
>> -fpic -g -O2 -c par3d.cpp -o par3d.o
>>> g++ -I/files3/R/R-3.2.1_install/lib64/R/include -DNDEBUG -DHAVE_PNG_H -
>> I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -
>> I/usr/include/freetype2 -Iext -I/usr/local/include -g -O2 -fvisibility=hidden
>> -fpic -g -O2 -c pixmap.cpp -o pixmap.o
>>> g++ -I/files3/R/R-3.2.1_install/lib64/R/include -DNDEBUG -DHAVE_PNG_H -
>> I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -
>> I/usr/include/freetype2 -Iext -I/usr/local/include -g -O2 -fvisibility=hidden
>> -fpic -g -O2 -c platform.cpp -o platform.o
>>> gcc -std=gnu99 -I/files3/R/R-3.2.1_install/lib64/R/include -DNDEBUG -
>> DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -
>> I/usr/include/freetype2 -Iext -I/usr/local/include -fvisibility=hidden -fpic -
>> g -O2 -c pretty.c -o pretty.o
>>> g++ -I/files3/R/R-3.2.1_install/lib64/R/include -DNDEBUG -DHAVE_PNG_H -
>> I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -
>> I/usr/include/freetype2 -Iext -I/usr/local/include -g -O2 -fvisibility=hidden
>> -fpic -g -O2 -c render.cpp -o render.o
>>> g++ -I/files3/R/R-3.2.1_install/lib64/R/include -DNDEBUG -DHAVE_PNG_H -
>> I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -
>> I/usr/include/freetype2 -Iext -I/usr/local/include -g -O2 -fvisibility=hidden
>> -fpic -g -O2 -c rglmath.cpp -o rglmath.o
>>> g++ -I/files3/R/R-3.2.1_install/lib64/R/include -DNDEBUG -DHAVE_PNG_H -
>> I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -
>> I/usr/include/freetype2 -Iext -I/usr/local/include -g -O2 -fvisibility=hidden
>> -fpic -g -O2 -c rglview.cpp -o rglview.o
>>> g++ -I/files3/R/R-3.2.1_install/lib64/R/include -DNDEBUG -DHAVE_PNG_H -
>> I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -
>> I/usr/include/freetype2 -Iext -I/usr/local/include -g -O2 -fvisibility=hidden
>> -fpic -g -O2 -c scene.cpp -o scene.o
>>> g++ -I/files3/R/R-3.2.1_install/lib64/R/include -DNDEBUG -DHAVE_PNG_H -
>> I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -
>> I/usr/include/freetype2 -Iext -I/usr/local/include -g -O2 -fvisibility=hidden
>> -fpic -g -O2 -c select.cpp -o select.o
>>> g++ -I/files3/R/R-3.2.1_install/lib64/R/include -DNDEBUG -DHAVE_PNG_H -
>> I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -
>> I/usr/include/freetype2 -Iext -I/usr/local/include -g -O2 -fvisibility=hidden
>> -fpic -g -O2 -c subscene.cpp -o subscene.o
>>> subscene.cpp: In member function 'void
>> rgl::Subscene::setupViewport(rgl::RenderContext*)':
>>> subscene.cpp:736: warning: converting to 'int' from 'double'
>>> subscene.cpp:737: warning: converting to 'int' from 'double'
>>> subscene.cpp:738: warning: converting to 'int' from 'double'
>>> subscene.cpp:739: warning: converting to 'int' from 'double'
>>> subscene.cpp:741: warning: converting to 'int' from 'double'
>>> subscene.cpp:742: warning: converting to 'int' from 'double'
>>> subscene.cpp:743: warning: converting to 'int' from 'double'
>>> subscene.cpp:744: warning: converting to 'int' from 'double'
>>> g++ -I/files3/R/R-3.2.1_install/lib64/R/include -DNDEBUG -DHAVE_PNG_H -
>> I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -
>> I/usr/include/freetype2 -Iext -I/usr/local/include -g -O2 -fvisibility=hidden
>> -fpic -g -O2 -c win32gui.cpp -o win32gui.o
>>> g++ -I/files3/R/R-3.2.1_install/lib64/R/include -DNDEBUG -DHAVE_PNG_H -
>> I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -
>> I/usr/include/freetype2 -Iext -I/usr/local/include -g -O2 -fvisibility=hidden
>> -fpic -g -O2 -c win32lib.cpp -o win32lib.o
>>> g++ -I/files3/R/R-3.2.1_install/lib64/R/include -DNDEBUG -DHAVE_PNG_H -
>> I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -
>> I/usr/include/freetype2 -Iext -I/usr/local/include -g -O2 -fvisibility=hidden
>> -fpic -g -O2 -c x11gui.cpp -o x11gui.o
>>> g++ -I/files3/R/R-3.2.1_install/lib64/R/include -DNDEBUG -DHAVE_PNG_H -
>> I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -
>> I/usr/include/freetype2 -Iext -I/usr/local/include -g -O2 -fvisibility=hidden
>> -fpic -g -O2 -c x11lib.cpp -o x11lib.o
>>> g++ -shared -L/files3/R/R-3.2.1_install/lib64/R/lib -L/usr/local/lib64
>>> g++ -o rgl.so ABCLineSet.o BBoxDeco.o Background.o ClipPlane.o Color.o
>>> g++ Disposable.o Light.o LineSet.o LineStripSet.o Material.o NULLgui.o
>>> g++ PlaneSet.o PointSet.o PrimitiveSet.o RenderContext.o Shape.o
>>> g++ SphereMesh.o SphereSet.o SpriteSet.o String.o Surface.o TextSet.o
>>> g++ Texture.o Viewpoint.o api.o assert.o callbacks.o device.o
>>> g++ devicemanager.o fps.o ftgl.o geom.o gl2ps.o glErrors.o glgui.o
>>> g++ gui.o init.o par3d.o pixmap.o platform.o pretty.o render.o
>>> g++ rglmath.o rglview.o scene.o select.o subscene.o win32gui.o
>>> g++ win32lib.o x11gui.o x11lib.o -lGLU -lGL -L/usr/lib64 -lpng12 -lX11
>>> g++ -lfreetype -L/files3/R/R-3.2.1_install/lib64/R/lib -lR
>>> installing to /files3/R/R-3.2.1_install/rgl.Rcheck/rgl/libs
>>> ** R
>>> ** demo
>>> ** inst
>>> ** preparing package for lazy loading
>>> ** help
>>> *** installing help indices
>>> ** building package indices
>>> ** installing vignettes
>>> ** testing if installed package can be loaded
>>> sh: line 1: 11949 Segmentation fault '/files3/R/R-
>> 3.2.1_install/lib64/R/bin/R' --no-save --slave 2>&1 <
>> '/tmp/RtmpQCpp6N/file2b115f4f8e1d'
>>>
>>> *** caught segfault ***
>>> address (nil), cause 'memory not mapped'
>>> aborting ...
>>> ERROR: loading failed
>>> * removing '/files3/R/R-3.2.1_install/rgl.Rcheck/rgl'
>>>
>>> Scott Waichler
>>> Pacific Northwest National Laboratory
>>> Richland, WA USA
>>>
>>> ______________________________________________
>>> R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see
>>> https://stat.ethz.ch/mailman/listinfo/r-help
>>> PLEASE do read the posting guide
>>> http://www.R-project.org/posting-guide.html
>>> and provide commented, minimal, self-contained, reproducible code.
>>>
>
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