[R] Can't install rgl: installed package can't be loaded; 'memory not mapped'
Duncan Murdoch
murdoch.duncan at gmail.com
Sat Aug 8 21:51:59 CEST 2015
On 08/08/2015 1:32 PM, Waichler, Scott R wrote:
> Hi, I can't install package rgl. The last lines from the install process talking about the error are:
I'd guess you have an OpenGL problem. Does glxgears run?
Duncan Murdoch
>
> ** testing if installed package can be loaded
> sh: line 1: 11949 Segmentation fault '/files3/R/R-3.2.1_install/lib64/R/bin/R' --no-save --slave 2>&1 < '/tmp/RtmpQCpp6N/file2b115f4f8e1d'
>
> *** caught segfault ***
> address (nil), cause 'memory not mapped'
> aborting ...
> ERROR: loading failed
>
> I realize this is probably not an R problem, but a Google search turns up nothing that helps, and I'm hoping someone here can help anyway. Below are my sessionInfo() output and the contents of the first file generated with "R CMD check rgl_0.95.1247.tar.gz".
>
>> sessionInfo()
> R version 3.2.1 (2015-06-18)
> Platform: x86_64-unknown-linux-gnu (64-bit)
>
> locale:
> [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
> [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
> [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
> [7] LC_PAPER=en_US.UTF-8 LC_NAME=C
> [9] LC_ADDRESS=C LC_TELEPHONE=C
> [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
>
> attached base packages:
> [1] stats graphics grDevices utils datasets methods base
>
> loaded via a namespace (and not attached):
> [1] tools_3.2.1
>
>
> # R CMD check rgl_0.95.1247.tar.gz
> * installing *source* package 'rgl' ...
> ** package 'rgl' successfully unpacked and MD5 sums checked
> checking for gcc... gcc -std=gnu99
> checking whether the C compiler works... yes
> checking for C compiler default output file name... a.out
> checking for suffix of executables...
> checking whether we are cross compiling... no
> checking for suffix of object files... o
> checking whether we are using the GNU C compiler... yes
> checking whether gcc -std=gnu99 accepts -g... yes
> checking for gcc -std=gnu99 option to accept ISO C89... none needed
> checking how to run the C preprocessor... gcc -std=gnu99 -E
> checking for gcc... (cached) gcc -std=gnu99
> checking whether we are using the GNU C compiler... (cached) yes
> checking whether gcc -std=gnu99 accepts -g... (cached) yes
> checking for gcc -std=gnu99 option to accept ISO C89... (cached) none needed
> checking whether __attribute__((visibility())) is supported... yes
> checking whether gcc -std=gnu99 accepts -fvisibility... yes
> checking whether accepts -fvisibility... no
> checking for libpng-config... yes
> configure: using libpng-config
> configure: using libpng dynamic linkage
> checking for X... libraries , headers
> checking GL/gl.h usability... yes
> checking GL/gl.h presence... yes
> checking for GL/gl.h... yes
> checking GL/glu.h usability... yes
> checking GL/glu.h presence... yes
> checking for GL/glu.h... yes
> checking for glEnd in -lGL... yes
> checking for gluProject in -lGLU... yes
> checking for freetype-config... yes
> configure: using Freetype and FTGL
> configure: creating ./config.status
> config.status: creating src/Makevars
> ** libs
> g++ -I/files3/R/R-3.2.1_install/lib64/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -I/usr/local/include -g -O2 -fvisibility=hidden -fpic -g -O2 -c ABCLineSet.cpp -o ABCLineSet.o
> g++ -I/files3/R/R-3.2.1_install/lib64/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -I/usr/local/include -g -O2 -fvisibility=hidden -fpic -g -O2 -c BBoxDeco.cpp -o BBoxDeco.o
> BBoxDeco.cpp: In member function 'int rgl::AxisInfo::getNticks(float, float)':
> BBoxDeco.cpp:239: warning: converting to 'int' from 'float'
> g++ -I/files3/R/R-3.2.1_install/lib64/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -I/usr/local/include -g -O2 -fvisibility=hidden -fpic -g -O2 -c Background.cpp -o Background.o
> g++ -I/files3/R/R-3.2.1_install/lib64/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -I/usr/local/include -g -O2 -fvisibility=hidden -fpic -g -O2 -c ClipPlane.cpp -o ClipPlane.o
> g++ -I/files3/R/R-3.2.1_install/lib64/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -I/usr/local/include -g -O2 -fvisibility=hidden -fpic -g -O2 -c Color.cpp -o Color.o
> g++ -I/files3/R/R-3.2.1_install/lib64/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -I/usr/local/include -g -O2 -fvisibility=hidden -fpic -g -O2 -c Disposable.cpp -o Disposable.o
> g++ -I/files3/R/R-3.2.1_install/lib64/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -I/usr/local/include -g -O2 -fvisibility=hidden -fpic -g -O2 -c Light.cpp -o Light.o
> g++ -I/files3/R/R-3.2.1_install/lib64/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -I/usr/local/include -g -O2 -fvisibility=hidden -fpic -g -O2 -c LineSet.cpp -o LineSet.o
> g++ -I/files3/R/R-3.2.1_install/lib64/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -I/usr/local/include -g -O2 -fvisibility=hidden -fpic -g -O2 -c LineStripSet.cpp -o LineStripSet.o
> g++ -I/files3/R/R-3.2.1_install/lib64/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -I/usr/local/include -g -O2 -fvisibility=hidden -fpic -g -O2 -c Material.cpp -o Material.o
> g++ -I/files3/R/R-3.2.1_install/lib64/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -I/usr/local/include -g -O2 -fvisibility=hidden -fpic -g -O2 -c NULLgui.cpp -o NULLgui.o
> g++ -I/files3/R/R-3.2.1_install/lib64/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -I/usr/local/include -g -O2 -fvisibility=hidden -fpic -g -O2 -c PlaneSet.cpp -o PlaneSet.o
> g++ -I/files3/R/R-3.2.1_install/lib64/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -I/usr/local/include -g -O2 -fvisibility=hidden -fpic -g -O2 -c PointSet.cpp -o PointSet.o
> g++ -I/files3/R/R-3.2.1_install/lib64/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -I/usr/local/include -g -O2 -fvisibility=hidden -fpic -g -O2 -c PrimitiveSet.cpp -o PrimitiveSet.o
> g++ -I/files3/R/R-3.2.1_install/lib64/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -I/usr/local/include -g -O2 -fvisibility=hidden -fpic -g -O2 -c RenderContext.cpp -o RenderContext.o
> g++ -I/files3/R/R-3.2.1_install/lib64/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -I/usr/local/include -g -O2 -fvisibility=hidden -fpic -g -O2 -c Shape.cpp -o Shape.o
> g++ -I/files3/R/R-3.2.1_install/lib64/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -I/usr/local/include -g -O2 -fvisibility=hidden -fpic -g -O2 -c SphereMesh.cpp -o SphereMesh.o
> g++ -I/files3/R/R-3.2.1_install/lib64/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -I/usr/local/include -g -O2 -fvisibility=hidden -fpic -g -O2 -c SphereSet.cpp -o SphereSet.o
> g++ -I/files3/R/R-3.2.1_install/lib64/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -I/usr/local/include -g -O2 -fvisibility=hidden -fpic -g -O2 -c SpriteSet.cpp -o SpriteSet.o
> g++ -I/files3/R/R-3.2.1_install/lib64/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -I/usr/local/include -g -O2 -fvisibility=hidden -fpic -g -O2 -c String.cpp -o String.o
> g++ -I/files3/R/R-3.2.1_install/lib64/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -I/usr/local/include -g -O2 -fvisibility=hidden -fpic -g -O2 -c Surface.cpp -o Surface.o
> g++ -I/files3/R/R-3.2.1_install/lib64/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -I/usr/local/include -g -O2 -fvisibility=hidden -fpic -g -O2 -c TextSet.cpp -o TextSet.o
> g++ -I/files3/R/R-3.2.1_install/lib64/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -I/usr/local/include -g -O2 -fvisibility=hidden -fpic -g -O2 -c Texture.cpp -o Texture.o
> g++ -I/files3/R/R-3.2.1_install/lib64/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -I/usr/local/include -g -O2 -fvisibility=hidden -fpic -g -O2 -c Viewpoint.cpp -o Viewpoint.o
> g++ -I/files3/R/R-3.2.1_install/lib64/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -I/usr/local/include -g -O2 -fvisibility=hidden -fpic -g -O2 -c api.cpp -o api.o
> g++ -I/files3/R/R-3.2.1_install/lib64/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -I/usr/local/include -g -O2 -fvisibility=hidden -fpic -g -O2 -c assert.cpp -o assert.o
> g++ -I/files3/R/R-3.2.1_install/lib64/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -I/usr/local/include -g -O2 -fvisibility=hidden -fpic -g -O2 -c callbacks.cpp -o callbacks.o
> g++ -I/files3/R/R-3.2.1_install/lib64/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -I/usr/local/include -g -O2 -fvisibility=hidden -fpic -g -O2 -c device.cpp -o device.o
> g++ -I/files3/R/R-3.2.1_install/lib64/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -I/usr/local/include -g -O2 -fvisibility=hidden -fpic -g -O2 -c devicemanager.cpp -o devicemanager.o
> g++ -I/files3/R/R-3.2.1_install/lib64/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -I/usr/local/include -g -O2 -fvisibility=hidden -fpic -g -O2 -c fps.cpp -o fps.o
> g++ -I/files3/R/R-3.2.1_install/lib64/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -I/usr/local/include -g -O2 -fvisibility=hidden -fpic -g -O2 -c ftgl.cpp -o ftgl.o
> g++ -I/files3/R/R-3.2.1_install/lib64/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -I/usr/local/include -g -O2 -fvisibility=hidden -fpic -g -O2 -c geom.cpp -o geom.o
> gcc -std=gnu99 -I/files3/R/R-3.2.1_install/lib64/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c gl2ps.c -o gl2ps.o
> g++ -I/files3/R/R-3.2.1_install/lib64/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -I/usr/local/include -g -O2 -fvisibility=hidden -fpic -g -O2 -c glErrors.cpp -o glErrors.o
> g++ -I/files3/R/R-3.2.1_install/lib64/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -I/usr/local/include -g -O2 -fvisibility=hidden -fpic -g -O2 -c glgui.cpp -o glgui.o
> glgui.cpp: In member function 'virtual void rgl::GLBitmapFont::draw(const char*, int, double, double, const rgl::RenderContext&)':
> glgui.cpp:115: warning: passing 'double' for argument 3 to 'GLint gl2psTextOpt(const char*, const char*, GLshort, GLint, GLfloat)'
> glgui.cpp: In constructor 'rgl::GLFTFont::GLFTFont(const char*, int, double, const char*)':
> glgui.cpp:144: warning: converting to 'unsigned int' from 'double'
> glgui.cpp: In member function 'virtual void rgl::GLFTFont::draw(const char*, int, double, double, const rgl::RenderContext&)':
> glgui.cpp:182: warning: passing 'double' for argument 3 to 'GLint gl2psTextOpt(const char*, const char*, GLshort, GLint, GLfloat)'
> g++ -I/files3/R/R-3.2.1_install/lib64/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -I/usr/local/include -g -O2 -fvisibility=hidden -fpic -g -O2 -c gui.cpp -o gui.o
> g++ -I/files3/R/R-3.2.1_install/lib64/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -I/usr/local/include -g -O2 -fvisibility=hidden -fpic -g -O2 -c init.cpp -o init.o
> g++ -I/files3/R/R-3.2.1_install/lib64/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -I/usr/local/include -g -O2 -fvisibility=hidden -fpic -g -O2 -c par3d.cpp -o par3d.o
> g++ -I/files3/R/R-3.2.1_install/lib64/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -I/usr/local/include -g -O2 -fvisibility=hidden -fpic -g -O2 -c pixmap.cpp -o pixmap.o
> g++ -I/files3/R/R-3.2.1_install/lib64/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -I/usr/local/include -g -O2 -fvisibility=hidden -fpic -g -O2 -c platform.cpp -o platform.o
> gcc -std=gnu99 -I/files3/R/R-3.2.1_install/lib64/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c pretty.c -o pretty.o
> g++ -I/files3/R/R-3.2.1_install/lib64/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -I/usr/local/include -g -O2 -fvisibility=hidden -fpic -g -O2 -c render.cpp -o render.o
> g++ -I/files3/R/R-3.2.1_install/lib64/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -I/usr/local/include -g -O2 -fvisibility=hidden -fpic -g -O2 -c rglmath.cpp -o rglmath.o
> g++ -I/files3/R/R-3.2.1_install/lib64/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -I/usr/local/include -g -O2 -fvisibility=hidden -fpic -g -O2 -c rglview.cpp -o rglview.o
> g++ -I/files3/R/R-3.2.1_install/lib64/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -I/usr/local/include -g -O2 -fvisibility=hidden -fpic -g -O2 -c scene.cpp -o scene.o
> g++ -I/files3/R/R-3.2.1_install/lib64/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -I/usr/local/include -g -O2 -fvisibility=hidden -fpic -g -O2 -c select.cpp -o select.o
> g++ -I/files3/R/R-3.2.1_install/lib64/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -I/usr/local/include -g -O2 -fvisibility=hidden -fpic -g -O2 -c subscene.cpp -o subscene.o
> subscene.cpp: In member function 'void rgl::Subscene::setupViewport(rgl::RenderContext*)':
> subscene.cpp:736: warning: converting to 'int' from 'double'
> subscene.cpp:737: warning: converting to 'int' from 'double'
> subscene.cpp:738: warning: converting to 'int' from 'double'
> subscene.cpp:739: warning: converting to 'int' from 'double'
> subscene.cpp:741: warning: converting to 'int' from 'double'
> subscene.cpp:742: warning: converting to 'int' from 'double'
> subscene.cpp:743: warning: converting to 'int' from 'double'
> subscene.cpp:744: warning: converting to 'int' from 'double'
> g++ -I/files3/R/R-3.2.1_install/lib64/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -I/usr/local/include -g -O2 -fvisibility=hidden -fpic -g -O2 -c win32gui.cpp -o win32gui.o
> g++ -I/files3/R/R-3.2.1_install/lib64/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -I/usr/local/include -g -O2 -fvisibility=hidden -fpic -g -O2 -c win32lib.cpp -o win32lib.o
> g++ -I/files3/R/R-3.2.1_install/lib64/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -I/usr/local/include -g -O2 -fvisibility=hidden -fpic -g -O2 -c x11gui.cpp -o x11gui.o
> g++ -I/files3/R/R-3.2.1_install/lib64/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -I/usr/local/include -g -O2 -fvisibility=hidden -fpic -g -O2 -c x11lib.cpp -o x11lib.o
> g++ -shared -L/files3/R/R-3.2.1_install/lib64/R/lib -L/usr/local/lib64 -o rgl.so ABCLineSet.o BBoxDeco.o Background.o ClipPlane.o Color.o Disposable.o Light.o LineSet.o LineStripSet.o Material.o NULLgui.o PlaneSet.o PointSet.o PrimitiveSet.o RenderContext.o Shape.o SphereMesh.o SphereSet.o SpriteSet.o String.o Surface.o TextSet.o Texture.o Viewpoint.o api.o assert.o callbacks.o device.o devicemanager.o fps.o ftgl.o geom.o gl2ps.o glErrors.o glgui.o gui.o init.o par3d.o pixmap.o platform.o pretty.o render.o rglmath.o rglview.o scene.o select.o subscene.o win32gui.o win32lib.o x11gui.o x11lib.o -lGLU -lGL -L/usr/lib64 -lpng12 -lX11 -lfreetype -L/files3/R/R-3.2.1_install/lib64/R/lib -lR
> installing to /files3/R/R-3.2.1_install/rgl.Rcheck/rgl/libs
> ** R
> ** demo
> ** inst
> ** preparing package for lazy loading
> ** help
> *** installing help indices
> ** building package indices
> ** installing vignettes
> ** testing if installed package can be loaded
> sh: line 1: 11949 Segmentation fault '/files3/R/R-3.2.1_install/lib64/R/bin/R' --no-save --slave 2>&1 < '/tmp/RtmpQCpp6N/file2b115f4f8e1d'
>
> *** caught segfault ***
> address (nil), cause 'memory not mapped'
> aborting ...
> ERROR: loading failed
> * removing '/files3/R/R-3.2.1_install/rgl.Rcheck/rgl'
>
> Scott Waichler
> Pacific Northwest National Laboratory
> Richland, WA USA
>
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