[R] rmarkdown linux mint 17

[AURORA GONZALEZ VIDAL]

Hello.
I am trying to intstall the R package "rmarkdown" in my linux mint 17
quiana computer but I'm having strange problems:
install.packages("rmarkdown") returns errors when installing the
dependencies such as mime, digest, bitops, yaml, knitr...etc. And
installing one by one it happens the same.

The errors are:
* installing *source* package ‘mime’ ...
** package ‘mime’ successfully unpacked and MD5 sums checked
** libs
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG      -fpic  -O3
-pipe  -g  -c rawmatch.c -o rawmatch.o
In file included from rawmatch.c:1:0:
/usr/share/R/include/R.h:28:20: fatal error: stdlib.h: No existe el archivo
o el directorio
 #include <stdlib.h>
                    ^
compilation terminated.
make: *** [rawmatch.o] Error 1
ERROR: compilation failed for package ‘mime’
* removing ‘/home/aurora/R/i686-pc-linux-gnu-library/3.0/mime’
Warning in install.packages :
  installation of package ‘mime’ had non-zero exit status
* installing *source* package ‘digest’ ...
** package ‘digest’ successfully unpacked and MD5 sums checked
** libs
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG      -fpic  -O3
-pipe  -g  -c aes.c -o aes.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG      -fpic  -O3
-pipe  -g  -c crc32.c -o crc32.o
In file included from crc32.c:23:0:
zutil.h:21:22: fatal error: string.h: No existe el archivo o el directorio
 #  include <string.h>
                      ^
compilation terminated.
make: *** [crc32.o] Error 1
ERROR: compilation failed for package ‘digest’
* removing ‘/home/aurora/R/i686-pc-linux-gnu-library/3.0/digest’
Warning in install.packages :
  installation of package ‘digest’ had non-zero exit status
* installing *source* package ‘bitops’ ...
** package ‘bitops’ successfully unpacked and MD5 sums checked
** libs
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG      -fpic  -O3
-pipe  -g  -c bit-ops.c -o bit-ops.o
In file included from bit-ops.c:1:0:
/usr/share/R/include/R.h:28:20: fatal error: stdlib.h: No existe el archivo
o el directorio
 #include <stdlib.h>
                    ^
compilation terminated.
make: *** [bit-ops.o] Error 1
ERROR: compilation failed for package ‘bitops’
* removing ‘/home/aurora/R/i686-pc-linux-gnu-library/3.0/bitops’
Warning in install.packages :
  installation of package ‘bitops’ had non-zero exit status
* installing *source* package ‘yaml’ ...
** package ‘yaml’ successfully unpacked and MD5 sums checked
** libs
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -DNDEBUG     -fpic 
-O3 -pipe  -g  -c api.c -o api.o
In file included from yaml_private.h:6:0,
                 from api.c:2:
yaml.h:18:20: fatal error: stdlib.h: No existe el archivo o el directorio
 #include <stdlib.h>
                    ^
compilation terminated.
make: *** [api.o] Error 1
ERROR: compilation failed for package ‘yaml’
* removing ‘/home/aurora/R/i686-pc-linux-gnu-library/3.0/yaml’
Warning in install.packages :
  installation of package ‘yaml’ had non-zero exit status
ERROR: dependency ‘mime’ is not available for package ‘markdown’
* removing ‘/home/aurora/R/i686-pc-linux-gnu-library/3.0/markdown’
Warning in install.packages :
  installation of package ‘markdown’ had non-zero exit status
ERROR: dependency ‘digest’ is not available for package ‘htmltools’
* removing ‘/home/aurora/R/i686-pc-linux-gnu-library/3.0/htmltools’
Warning in install.packages :
  installation of package ‘htmltools’ had non-zero exit status
ERROR: dependency ‘bitops’ is not available for package ‘caTools’
* removing ‘/home/aurora/R/i686-pc-linux-gnu-library/3.0/caTools’
Warning in install.packages :
  installation of package ‘caTools’ had non-zero exit status
ERROR: dependencies ‘digest’, ‘markdown’ are not available for
package ‘knitr’
* removing ‘/home/aurora/R/i686-pc-linux-gnu-library/3.0/knitr’
Warning in install.packages :
  installation of package ‘knitr’ had non-zero exit status
ERROR: dependencies ‘knitr’, ‘yaml’, ‘htmltools’, ‘caTools’
are not available for package ‘rmarkdown’
* removing ‘/home/aurora/R/i686-pc-linux-gnu-library/3.0/rmarkdown’
Warning in install.packages :
  installation of package ‘rmarkdown’ had non-zero exit status

This is my sessionInfo() in case that it could help:
R version 3.0.2 (2013-09-25)
Platform: i686-pc-linux-gnu (32-bit)

locale:
 [1] LC_CTYPE=es_ES.UTF-8       LC_NUMERIC=C            
 
 [3] LC_TIME=es_ES.UTF-8        LC_COLLATE=es_ES.UTF-8    
 [5] LC_MONETARY=es_ES.UTF-8    LC_MESSAGES=es_ES.UTF-8   
 [7] LC_PAPER=es_ES.UTF-8      
LC_NAME=C                 
 [9] LC_ADDRESS=C              
LC_TELEPHONE=C            
[11] LC_MEASUREMENT=es_ES.UTF-8 LC_IDENTIFICATION=C       

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods  
base     

loaded via a namespace (and not attached):
[1] tools_3.0.2

Thank you very much for any advice.


------
Aurora González Vidal

Sección Apoyo Estadístico.
Servicio de Apoyo a la Investigación (SAI).
Vicerrectorado de Investigación.
Universidad de Murcia
Edif. SACE . Campus de Espinardo.
30100 Murcia

@. aurora.gonzalez2 en um.es
T. 868 88 7315
F. 868 88 7302
www.um.es/sai
www.um.es/ae

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